Variant report
| Variant | rs4678716 |
|---|---|
| Chromosome Location | chr3:34910638-34910639 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | JUN | chr3:34910502-34910768 | HepG2 | liver: | n/a | chr3:34910637-34910646 chr3:34910633-34910646 |
| 2 | MAFK | chr3:34910572-34910785 | HepG2 | liver: | n/a | chr3:34910681-34910692 chr3:34910681-34910692 chr3:34910681-34910697 chr3:34910680-34910694 |
| 3 | JUND | chr3:34910473-34910816 | HepG2 | liver: | n/a | chr3:34910637-34910646 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| FECHP1 | TF binding region |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11925888 | 0.86[EUR][1000 genomes] |
| rs12053892 | 0.90[ASN][1000 genomes] |
| rs12635860 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1357428 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1474299 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17032340 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17032385 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2071488 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4549234 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4575830 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4678717 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4678724 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs56235912 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs58778451 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs59750319 | 0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs62260224 | 0.91[ASN][1000 genomes] |
| rs6550306 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6784632 | 0.83[ASN][1000 genomes] |
| rs6792813 | 1.00[ASN][1000 genomes] |
| rs73061969 | 0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73063843 | 0.87[ASN][1000 genomes] |
| rs7625986 | 0.91[ASN][1000 genomes] |
| rs7650825 | 0.86[EUR][1000 genomes] |
| rs940047 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834654 | chr3:34747802-34916657 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3415700 | chr3:34806371-34914306 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv590052 | chr3:34910172-34937547 | Weak transcription Enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
