Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12053892	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1357428	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1474299	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17032340	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17032385	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2071488	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4549234	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4575830	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4678716	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4678717	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4678724	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56235912	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59750319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62260224	0.87[ASN][1000 genomes]
rs6550306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6792813	0.92[ASN][1000 genomes]
rs73061969	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73063843	0.83[ASN][1000 genomes]
rs7625986	0.85[ASN][1000 genomes]
rs940047	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv432407	chr3:34869616-34898125	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3405919	chr3:34894548-34896696	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34885600-34897400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:34886000-34897000	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:34893200-34897200	Weak transcription	Fetal Stomach	stomach
4	chr3:34893200-34897400	Weak transcription	Fetal Brain Male	brain
5	chr3:34893200-34897800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:34893600-34897400	Weak transcription	Dnd41	blood
7	chr3:34894200-34896600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:34896200-34897400	Enhancers	Primary neutrophils fromperipheralblood	blood

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