Variant report

Variant	rs12640833
Chromosome Location	chr4:81553197-81553198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10857170	0.81[ASN][1000 genomes]
rs11099248	0.81[ASN][1000 genomes]
rs12233833	0.86[ASN][1000 genomes]
rs12639952	0.86[ASN][1000 genomes]
rs12639967	0.86[ASN][1000 genomes]
rs12650756	0.81[ASN][1000 genomes]
rs13111397	0.81[ASN][1000 genomes]
rs13112370	0.81[ASN][1000 genomes]
rs13129636	0.81[ASN][1000 genomes]
rs13136894	0.86[ASN][1000 genomes]
rs13141796	0.86[ASN][1000 genomes]
rs13146627	0.81[ASN][1000 genomes]
rs1486023	0.86[ASN][1000 genomes]
rs1495490	0.81[ASN][1000 genomes]
rs17004945	0.86[ASN][1000 genomes]
rs28494703	0.84[ASN][1000 genomes]
rs34890603	0.81[ASN][1000 genomes]
rs34938691	0.81[ASN][1000 genomes]
rs35466241	0.86[ASN][1000 genomes]
rs35565546	0.81[ASN][1000 genomes]
rs35990705	0.86[ASN][1000 genomes]
rs6843444	0.81[ASN][1000 genomes]
rs6856538	0.81[ASN][1000 genomes]
rs71596010	0.81[ASN][1000 genomes]
rs71596022	0.86[ASN][1000 genomes]
rs7678081	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv964276	chr4:81543380-81555021	Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12640833	CNOT6L	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81545200-81556600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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