Variant report

Variant	rs12639967
Chromosome Location	chr4:81530951-81530952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81519146..81521026-chr4:81528690..81531037,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10857170	0.95[ASN][1000 genomes]
rs11099248	0.95[ASN][1000 genomes]
rs11732671	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11732964	0.93[ASN][1000 genomes]
rs12233833	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639952	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12640833	0.86[ASN][1000 genomes]
rs12641282	0.86[ASN][1000 genomes]
rs12647975	0.85[ASN][1000 genomes]
rs12648193	0.93[ASN][1000 genomes]
rs12650756	0.95[ASN][1000 genomes]
rs13111397	0.95[ASN][1000 genomes]
rs13112370	0.95[ASN][1000 genomes]
rs13124220	0.82[ASN][1000 genomes]
rs13127693	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13129636	0.95[ASN][1000 genomes]
rs13131230	0.90[ASN][1000 genomes]
rs13136894	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146627	0.95[ASN][1000 genomes]
rs13152141	0.88[ASN][1000 genomes]
rs1486023	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495490	0.95[ASN][1000 genomes]
rs1531959	0.93[ASN][1000 genomes]
rs17004908	0.82[ASN][1000 genomes]
rs17004945	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172879	0.86[ASN][1000 genomes]
rs28494703	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34636382	0.81[ASN][1000 genomes]
rs34890603	0.95[ASN][1000 genomes]
rs34938691	0.95[ASN][1000 genomes]
rs35308242	0.86[ASN][1000 genomes]
rs35466241	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35565546	0.95[ASN][1000 genomes]
rs35990705	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820209	0.82[ASN][1000 genomes]
rs6829720	0.93[ASN][1000 genomes]
rs6833553	0.88[ASN][1000 genomes]
rs6843444	0.95[ASN][1000 genomes]
rs6856538	0.95[ASN][1000 genomes]
rs71596010	0.95[ASN][1000 genomes]
rs71596022	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678081	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684929	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1804420	chr4:81529088-81535393	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1815074	chr4:81529088-81535393	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3507556	chr4:81529778-81537026	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1815120	chr4:81529855-81535393	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1814776	chr4:81529867-81535393	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3488564	chr4:81529978-81537076	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3488566	chr4:81530910-81536366	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81530200-81531400	Weak transcription	Fetal Intestine Large	intestine
2	chr4:81530400-81531600	Weak transcription	Osteobl	bone
3	chr4:81530600-81531000	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:81530600-81532000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:81530800-81531000	Enhancers	Primary B cells from cord blood	blood

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