Variant report

Variant	rs12639952
Chromosome Location	chr4:81493614-81493615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10857170	0.95[ASN][1000 genomes]
rs11099248	0.95[ASN][1000 genomes]
rs11732671	0.93[ASN][1000 genomes]
rs11732964	0.93[ASN][1000 genomes]
rs12233833	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639967	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12640833	0.86[ASN][1000 genomes]
rs12641282	0.86[ASN][1000 genomes]
rs12647975	0.85[ASN][1000 genomes]
rs12648193	0.93[ASN][1000 genomes]
rs12650756	0.95[ASN][1000 genomes]
rs13111397	0.95[ASN][1000 genomes]
rs13112370	0.95[ASN][1000 genomes]
rs13124220	0.82[ASN][1000 genomes]
rs13127693	0.92[ASN][1000 genomes]
rs13129636	0.95[ASN][1000 genomes]
rs13131230	0.90[ASN][1000 genomes]
rs13136894	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141796	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146627	0.95[ASN][1000 genomes]
rs13152141	0.88[ASN][1000 genomes]
rs1486023	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495490	0.95[ASN][1000 genomes]
rs1531959	0.93[ASN][1000 genomes]
rs17004908	0.82[ASN][1000 genomes]
rs17004945	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172879	0.86[ASN][1000 genomes]
rs28494703	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34636382	0.81[ASN][1000 genomes]
rs34890603	0.95[ASN][1000 genomes]
rs34938691	0.95[ASN][1000 genomes]
rs35308242	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35466241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35565546	0.95[ASN][1000 genomes]
rs35990705	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820209	0.82[ASN][1000 genomes]
rs6829720	0.93[ASN][1000 genomes]
rs6833553	0.88[ASN][1000 genomes]
rs6843444	0.95[ASN][1000 genomes]
rs6856538	0.95[ASN][1000 genomes]
rs71596010	0.95[ASN][1000 genomes]
rs71596022	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678081	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684929	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv966477	chr4:81488950-81499589	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81488400-81494800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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