Variant report

Variant	rs2172879
Chromosome Location	chr4:81411049-81411050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10009812	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10033567	0.82[JPT][hapmap]
rs10857170	0.91[ASN][1000 genomes]
rs11099248	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11732671	0.90[ASN][1000 genomes]
rs11732964	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12233833	0.86[ASN][1000 genomes]
rs12639952	0.86[ASN][1000 genomes]
rs12639967	0.86[ASN][1000 genomes]
rs12641282	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12647975	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12648193	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12650756	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13111397	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13112370	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13115510	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13124220	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13129636	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13136894	0.86[ASN][1000 genomes]
rs13141796	0.86[ASN][1000 genomes]
rs13146627	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13152141	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1486023	0.86[ASN][1000 genomes]
rs1495484	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1495490	0.91[ASN][1000 genomes]
rs1531959	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17004908	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17004945	0.86[ASN][1000 genomes]
rs28494703	0.85[ASN][1000 genomes]
rs34636382	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34890603	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34938691	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35220988	0.82[ASN][1000 genomes]
rs35466241	0.86[ASN][1000 genomes]
rs35565546	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35990705	0.86[ASN][1000 genomes]
rs36027051	0.81[EUR][1000 genomes]
rs6820209	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6829720	0.90[ASN][1000 genomes]
rs6833553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6843444	0.91[ASN][1000 genomes]
rs6856538	0.91[ASN][1000 genomes]
rs71596010	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71596022	0.86[ASN][1000 genomes]
rs7672761	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7678081	0.86[ASN][1000 genomes]
rs7684929	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528410	chr4:81402774-81411380	Weak transcription Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81406200-81412600	Weak transcription	Osteobl	bone
2	chr4:81407600-81421800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:81408600-81412000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:81410400-81411600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:81410600-81411200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:81410600-81411400	Enhancers	Primary B cells from peripheral blood	blood
7	chr4:81410600-81411600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr4:81410600-81411800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:81410600-81411800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr4:81410800-81411400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr4:81411000-81411400	Enhancers	Primary T cells fromperipheralblood	blood
12	chr4:81411000-81411400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr4:81411000-81411400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:81411000-81411400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:81411000-81411600	Enhancers	Primary T cells from cord blood	blood
16	chr4:81411000-81411600	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr4:81411000-81416600	Enhancers	Primary T helper cells fromperipheralblood	blood

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