Variant report

Variant	rs1486023
Chromosome Location	chr4:81540299-81540300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81540203..81541132-chr4:81973708..81974534,2	MCF-7	breast:
2	chr4:81539992..81540886-chr4:81910834..81911713,5	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10857170	0.95[ASN][1000 genomes]
rs11099248	0.95[ASN][1000 genomes]
rs11732671	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11732964	0.93[ASN][1000 genomes]
rs12233833	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639952	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639967	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12640833	0.86[ASN][1000 genomes]
rs12641282	0.86[ASN][1000 genomes]
rs12647975	0.85[ASN][1000 genomes]
rs12648193	0.93[ASN][1000 genomes]
rs12650756	0.95[ASN][1000 genomes]
rs13111397	0.95[ASN][1000 genomes]
rs13112370	0.95[ASN][1000 genomes]
rs13124220	0.82[ASN][1000 genomes]
rs13127693	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13129636	0.95[ASN][1000 genomes]
rs13131230	0.90[ASN][1000 genomes]
rs13136894	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13141796	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146627	0.95[ASN][1000 genomes]
rs13152141	0.88[ASN][1000 genomes]
rs1495490	0.95[ASN][1000 genomes]
rs1531959	0.93[ASN][1000 genomes]
rs17004908	0.82[ASN][1000 genomes]
rs17004945	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172879	0.86[ASN][1000 genomes]
rs28494703	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34636382	0.81[ASN][1000 genomes]
rs34890603	0.95[ASN][1000 genomes]
rs34938691	0.95[ASN][1000 genomes]
rs35308242	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35466241	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35565546	0.95[ASN][1000 genomes]
rs35990705	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6820209	0.82[ASN][1000 genomes]
rs6829720	0.93[ASN][1000 genomes]
rs6833553	0.88[ASN][1000 genomes]
rs6843444	0.95[ASN][1000 genomes]
rs6856538	0.95[ASN][1000 genomes]
rs71596010	0.95[ASN][1000 genomes]
rs71596022	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678081	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684929	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81538000-81541200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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