Variant report

Variant	rs6820209
Chromosome Location	chr4:81373157-81373158
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10009812	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10033567	0.85[JPT][hapmap]
rs10857170	0.87[ASN][1000 genomes]
rs11099248	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11732671	0.85[ASN][1000 genomes]
rs11732964	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12233833	0.82[ASN][1000 genomes]
rs12639952	0.82[ASN][1000 genomes]
rs12639967	0.82[ASN][1000 genomes]
rs12641282	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12647975	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12648193	0.85[ASN][1000 genomes]
rs12650756	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13111397	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13112370	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13115510	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13124220	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13129636	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13136894	0.82[ASN][1000 genomes]
rs13141796	0.82[ASN][1000 genomes]
rs13146627	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13152141	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486023	0.82[ASN][1000 genomes]
rs1495484	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1495490	0.87[ASN][1000 genomes]
rs1531959	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17004908	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17004945	0.82[ASN][1000 genomes]
rs2172879	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28494703	0.81[ASN][1000 genomes]
rs34636382	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34890603	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34938691	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35220988	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35466241	0.82[ASN][1000 genomes]
rs35565546	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35990705	0.82[ASN][1000 genomes]
rs36027051	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36190401	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6829720	0.85[ASN][1000 genomes]
rs6833553	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6843444	0.87[ASN][1000 genomes]
rs6856538	0.87[ASN][1000 genomes]
rs71596010	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71596022	0.82[ASN][1000 genomes]
rs7672761	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7678081	0.82[ASN][1000 genomes]
rs7684929	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81361600-81381000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:81367600-81375200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:81367800-81375200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:81370000-81375200	Weak transcription	Osteobl	bone
5	chr4:81370200-81375200	Weak transcription	NHDF-Ad	bronchial
6	chr4:81372400-81374800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:81372600-81374600	Enhancers	Pancreatic Islets	Pancreatic Islet

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