Variant report

Variant	rs13124220
Chromosome Location	chr4:81393121-81393122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10857170	0.87[ASN][1000 genomes]
rs11099248	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11732671	0.85[ASN][1000 genomes]
rs11732964	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12233833	0.82[ASN][1000 genomes]
rs12639952	0.82[ASN][1000 genomes]
rs12639967	0.82[ASN][1000 genomes]
rs12641282	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12647975	0.83[EUR][1000 genomes]
rs12648193	0.85[ASN][1000 genomes]
rs12650756	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13111397	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13112370	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13115510	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13129636	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13136894	0.82[ASN][1000 genomes]
rs13141796	0.82[ASN][1000 genomes]
rs13146627	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13152141	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486023	0.82[ASN][1000 genomes]
rs1495484	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1495490	0.87[ASN][1000 genomes]
rs1531959	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17004908	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17004945	0.82[ASN][1000 genomes]
rs2172879	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28494703	0.81[ASN][1000 genomes]
rs34636382	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34890603	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34938691	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35220988	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35466241	0.82[ASN][1000 genomes]
rs35565546	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35990705	0.82[ASN][1000 genomes]
rs36027051	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36190401	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6820209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829720	0.85[ASN][1000 genomes]
rs6833553	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6843444	0.87[ASN][1000 genomes]
rs6856538	0.87[ASN][1000 genomes]
rs71596010	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71596022	0.82[ASN][1000 genomes]
rs7672761	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7678081	0.82[ASN][1000 genomes]
rs7684929	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81391200-81393400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:81392600-81393200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr4:81392600-81393200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr4:81392600-81393200	Active TSS	HSMM	muscle
5	chr4:81392800-81393200	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr4:81392800-81393200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:81392800-81393200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr4:81392800-81393200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr4:81392800-81393200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr4:81392800-81393200	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr4:81392800-81393200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:81392800-81393200	Active TSS	Muscle Satellite Cultured Cells	--
13	chr4:81392800-81393200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:81392800-81393200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:81392800-81393200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:81392800-81393200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:81392800-81393200	Active TSS	Liver	Liver
18	chr4:81392800-81393200	Active TSS	Brain Anterior Caudate	brain
19	chr4:81392800-81393200	Active TSS	Brain Cingulate Gyrus	brain
20	chr4:81392800-81393200	Active TSS	Brain Substantia Nigra	brain
21	chr4:81392800-81393200	Active TSS	Colon Smooth Muscle	Colon
22	chr4:81392800-81393200	Active TSS	Duodenum Mucosa	Duodenum
23	chr4:81392800-81393200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
24	chr4:81392800-81393200	Active TSS	Fetal Kidney	kidney
25	chr4:81392800-81393200	Active TSS	Fetal Lung	lung
26	chr4:81392800-81393200	Active TSS	Rectal Mucosa Donor 31	rectum
27	chr4:81392800-81393200	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr4:81392800-81393200	Active TSS	NH-A	brain
29	chr4:81392800-81393200	Active TSS	NHEK	skin
30	chr4:81392800-81393200	Active TSS	NHLF	lung
31	chr4:81392800-81393400	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr4:81392800-81393400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:81392800-81393400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:81392800-81393400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr4:81392800-81393400	Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr4:81392800-81393400	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr4:81392800-81393400	Active TSS	HMEC	breast
38	chr4:81392800-81393400	Active TSS	Osteobl	bone
39	chr4:81392800-81393600	Active TSS	Stomach Smooth Muscle	stomach
40	chr4:81393000-81393200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:81393000-81393200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr4:81393000-81393200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:81393000-81393200	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr4:81393000-81393200	Enhancers	Aorta	Aorta
45	chr4:81393000-81393200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr4:81393000-81393200	Flanking Active TSS	Ovary	ovary
47	chr4:81393000-81393200	Enhancers	Pancreas	Pancrea
48	chr4:81393000-81393200	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr4:81393000-81393200	Enhancers	NHDF-Ad	bronchial
50	chr4:81393000-81394000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links