Variant report

Variant	rs11099248
Chromosome Location	chr4:81416752-81416753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81412527..81415093-chr4:81416583..81419281,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10857170	1.00[ASN][1000 genomes]
rs11732671	0.98[ASN][1000 genomes]
rs11732964	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12233833	0.95[ASN][1000 genomes]
rs12639952	0.95[ASN][1000 genomes]
rs12639967	0.95[ASN][1000 genomes]
rs12640833	0.81[ASN][1000 genomes]
rs12641282	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12647975	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12648193	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12650756	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111397	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13112370	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13115510	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13124220	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13127693	0.87[ASN][1000 genomes]
rs13129636	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131230	0.85[ASN][1000 genomes]
rs13136894	0.95[ASN][1000 genomes]
rs13141796	0.95[ASN][1000 genomes]
rs13146627	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152141	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486023	0.95[ASN][1000 genomes]
rs1495484	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1495490	1.00[ASN][1000 genomes]
rs1531959	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17004908	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17004945	0.95[ASN][1000 genomes]
rs2172879	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28494703	0.93[ASN][1000 genomes]
rs34636382	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34890603	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34938691	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35308242	0.81[ASN][1000 genomes]
rs35466241	0.95[ASN][1000 genomes]
rs35565546	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35990705	0.95[ASN][1000 genomes]
rs36027051	0.81[EUR][1000 genomes]
rs6820209	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6829720	0.98[ASN][1000 genomes]
rs6833553	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6843444	1.00[ASN][1000 genomes]
rs6856538	1.00[ASN][1000 genomes]
rs71596010	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71596022	0.95[ASN][1000 genomes]
rs7672761	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7678081	0.95[ASN][1000 genomes]
rs7684929	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81407600-81421800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:81412400-81416800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr4:81412600-81417200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr4:81412600-81417200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr4:81412800-81417400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr4:81413200-81417200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr4:81413800-81419400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:81414400-81416800	Enhancers	Primary T cells from cord blood	blood
9	chr4:81414400-81417000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:81414400-81417200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:81414400-81417200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr4:81414800-81417000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:81414800-81417800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr4:81415800-81417600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr4:81415800-81419000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:81416000-81418200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:81416200-81416800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:81416600-81416800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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