Variant report

Variant	rs13115510
Chromosome Location	chr4:81395258-81395259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81384214..81388026-chr4:81394205..81396994,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10857170	0.83[ASN][1000 genomes]
rs11099248	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11732671	0.82[ASN][1000 genomes]
rs11732964	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12641282	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12647975	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12648193	0.82[ASN][1000 genomes]
rs12650756	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13111397	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13112370	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13124220	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13129636	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13146627	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13152141	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1495484	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1495490	0.83[ASN][1000 genomes]
rs1531959	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17004908	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2172879	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34636382	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34890603	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34938691	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35220988	0.86[ASN][1000 genomes]
rs35565546	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36027051	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36190401	0.82[EUR][1000 genomes]
rs6820209	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6829720	0.82[ASN][1000 genomes]
rs6833553	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6843444	0.83[ASN][1000 genomes]
rs6856538	0.83[ASN][1000 genomes]
rs71596010	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7672761	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7684929	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81393400-81396600	Weak transcription	Osteobl	bone
2	chr4:81393400-81397000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:81393600-81396400	Weak transcription	Fetal Heart	heart
4	chr4:81393600-81396600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links