Variant report

Variant	rs13111397
Chromosome Location	chr4:81449030-81449031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10009812	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10033567	0.82[JPT][hapmap]
rs10857170	1.00[ASN][1000 genomes]
rs11099248	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732671	0.98[ASN][1000 genomes]
rs11732964	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12233833	0.95[ASN][1000 genomes]
rs12639952	0.95[ASN][1000 genomes]
rs12639967	0.95[ASN][1000 genomes]
rs12640833	0.81[ASN][1000 genomes]
rs12641282	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12647975	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12648193	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12650756	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13112370	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13115510	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13124220	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13127693	0.87[ASN][1000 genomes]
rs13129636	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131230	0.85[ASN][1000 genomes]
rs13136894	0.95[ASN][1000 genomes]
rs13141796	0.95[ASN][1000 genomes]
rs13146627	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152141	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486023	0.95[ASN][1000 genomes]
rs1495484	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1495490	1.00[ASN][1000 genomes]
rs1531959	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17004908	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17004945	0.95[ASN][1000 genomes]
rs2172879	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28494703	0.93[ASN][1000 genomes]
rs34636382	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34890603	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34938691	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35308242	0.81[ASN][1000 genomes]
rs35466241	0.95[ASN][1000 genomes]
rs35565546	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35990705	0.95[ASN][1000 genomes]
rs36027051	0.87[EUR][1000 genomes]
rs36190401	0.82[EUR][1000 genomes]
rs6820209	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6829720	0.98[ASN][1000 genomes]
rs6833553	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6843444	1.00[ASN][1000 genomes]
rs6856538	1.00[ASN][1000 genomes]
rs71596010	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71596022	0.95[ASN][1000 genomes]
rs7672761	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7678081	0.95[ASN][1000 genomes]
rs7684929	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81448400-81452800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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