Variant report

Variant	rs7684929
Chromosome Location	chr4:81407164-81407165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10857170	0.88[ASN][1000 genomes]
rs11099248	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11732671	0.87[ASN][1000 genomes]
rs11732964	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12233833	0.84[ASN][1000 genomes]
rs12639952	0.84[ASN][1000 genomes]
rs12639967	0.84[ASN][1000 genomes]
rs12641282	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12647975	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12648193	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12650756	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13111397	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13112370	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13115510	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13124220	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13129636	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13136894	0.84[ASN][1000 genomes]
rs13141796	0.84[ASN][1000 genomes]
rs13146627	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13152141	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1486023	0.84[ASN][1000 genomes]
rs1495484	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1495490	0.88[ASN][1000 genomes]
rs1531959	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17004908	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17004945	0.84[ASN][1000 genomes]
rs2172879	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28494703	0.82[ASN][1000 genomes]
rs34636382	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34890603	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34938691	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35220988	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35466241	0.84[ASN][1000 genomes]
rs35565546	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35990705	0.84[ASN][1000 genomes]
rs36027051	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36190401	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6820209	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6829720	0.87[ASN][1000 genomes]
rs6833553	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6843444	0.88[ASN][1000 genomes]
rs6856538	0.88[ASN][1000 genomes]
rs71596010	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71596022	0.84[ASN][1000 genomes]
rs7672761	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7678081	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv528410	chr4:81402774-81411380	Weak transcription Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81406200-81407400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:81406200-81407600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:81406200-81412600	Weak transcription	Osteobl	bone

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