Variant report

Variant	rs35220988
Chromosome Location	chr4:81378529-81378530
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12641282	0.82[ASN][1000 genomes]
rs13115510	0.86[ASN][1000 genomes]
rs13124220	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13152141	0.83[ASN][1000 genomes]
rs1495484	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17004908	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2172879	0.82[ASN][1000 genomes]
rs34636382	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6820209	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6833553	0.83[ASN][1000 genomes]
rs7672761	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7684929	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999334	chr4:81324288-81409040	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv537153	chr4:81324288-81409040	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81361600-81381000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:81376200-81380800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:81376200-81380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:81376200-81381400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:81376200-81386400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:81376400-81380400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:81376400-81380800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:81376400-81380800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:81376400-81381200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:81376400-81382200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:81376400-81382200	Weak transcription	Placenta	Placenta
12	chr4:81376600-81380600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:81376600-81380800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:81376600-81380800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:81376600-81381000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr4:81378000-81382000	Weak transcription	NHEK	skin
17	chr4:81378000-81382200	Weak transcription	HMEC	breast
18	chr4:81378000-81382600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:81378200-81382200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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