Variant report

Variant	rs12770090
Chromosome Location	chr10:62044341-62044342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:62042804..62045156-chr10:62046216..62048293,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11592290	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11815139	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11816837	0.85[AFR][1000 genomes]
rs12769536	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12780261	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12781443	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782314	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12782806	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12783491	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35044728	0.82[AMR][1000 genomes]
rs35098882	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35175163	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35305500	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479707	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68143724	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7090893	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095717	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71495632	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495633	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495634	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71495635	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7900123	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898330	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62023200-62053400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:62023800-62048000	Weak transcription	Fetal Stomach	stomach
3	chr10:62023800-62051600	Weak transcription	Pancreas	Pancrea
4	chr10:62023800-62055800	Weak transcription	Gastric	stomach
5	chr10:62027400-62059800	Weak transcription	Psoas Muscle	Psoas
6	chr10:62039000-62044400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:62039000-62046800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:62039000-62047400	Weak transcription	Ovary	ovary
9	chr10:62039000-62052200	Weak transcription	Fetal Lung	lung
10	chr10:62041000-62048600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:62041200-62047400	Weak transcription	Right Atrium	heart
12	chr10:62041400-62050200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:62041600-62044400	Enhancers	NHDF-Ad	bronchial
14	chr10:62041600-62050400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:62042000-62047000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:62042200-62052800	Enhancers	Fetal Heart	heart
17	chr10:62042400-62045200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:62042400-62050400	Weak transcription	Brain Anterior Caudate	brain
19	chr10:62042600-62048200	Weak transcription	Brain Angular Gyrus	brain
20	chr10:62042600-62051600	Weak transcription	Aorta	Aorta
21	chr10:62043000-62047800	Weak transcription	Brain Substantia Nigra	brain
22	chr10:62043200-62044600	Enhancers	K562	blood
23	chr10:62043200-62044800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:62043600-62045600	Enhancers	HUVEC	blood vessel
25	chr10:62043600-62046200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:62043600-62051200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:62043600-62052800	Weak transcription	NHLF	lung
28	chr10:62043800-62045600	Enhancers	Left Ventricle	heart
29	chr10:62044000-62045200	Weak transcription	HSMMtube	muscle
30	chr10:62044000-62045600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:62044000-62047600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:62044000-62047600	Weak transcription	NH-A	brain
33	chr10:62044000-62049600	Weak transcription	HSMM	muscle
34	chr10:62044200-62045200	Weak transcription	Brain Hippocampus Middle	brain
35	chr10:62044200-62046400	Weak transcription	Stomach Mucosa	stomach
36	chr10:62044200-62046400	Weak transcription	Osteobl	bone
37	chr10:62044200-62048000	Weak transcription	Right Ventricle	heart

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