Variant report

Variant	rs12781443
Chromosome Location	chr10:62042627-62042628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:62005023..62007605-chr10:62041396..62043004,2	MCF-7	breast:
2	chr10:62042161..62042892-chr7:65418290..65419212,2	MCF-7	breast:
3	chr10:62042435..62044316-chr10:62194038..62195785,2	MCF-7	breast:
4	chr10:62026501..62028355-chr10:62041075..62043444,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10821708	1.00[CEU][hapmap]
rs11592290	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11815139	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12769536	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12769571	0.83[CEU][hapmap]
rs12770090	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771158	0.81[CEU][hapmap]
rs12780261	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12782314	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12782806	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12783491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17233781	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs17233871	0.89[CEU][hapmap];0.84[AMR][1000 genomes]
rs35098882	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35175163	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35305500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35545571	0.81[AMR][1000 genomes]
rs35628300	0.81[AMR][1000 genomes]
rs36080943	0.81[AMR][1000 genomes]
rs6479707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090893	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095717	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71495632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495633	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495634	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71495635	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71495636	0.81[AMR][1000 genomes]
rs7900123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898330	0.89[CEU][hapmap]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62023200-62043800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:62023200-62053400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:62023800-62043800	Weak transcription	Right Ventricle	heart
4	chr10:62023800-62048000	Weak transcription	Fetal Stomach	stomach
5	chr10:62023800-62051600	Weak transcription	Pancreas	Pancrea
6	chr10:62023800-62055800	Weak transcription	Gastric	stomach
7	chr10:62027400-62059800	Weak transcription	Psoas Muscle	Psoas
8	chr10:62039000-62044400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:62039000-62046800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:62039000-62047400	Weak transcription	Ovary	ovary
11	chr10:62039000-62052200	Weak transcription	Fetal Lung	lung
12	chr10:62040200-62042800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr10:62040400-62043000	Enhancers	Brain Substantia Nigra	brain
14	chr10:62040600-62043000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:62040600-62044200	Enhancers	Brain Hippocampus Middle	brain
16	chr10:62040800-62042800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:62040800-62043400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:62041000-62043200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr10:62041000-62043800	Weak transcription	Left Ventricle	heart
20	chr10:62041000-62044000	Enhancers	Hela-S3	cervix
21	chr10:62041000-62048600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:62041200-62047400	Weak transcription	Right Atrium	heart
23	chr10:62041400-62050200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:62041600-62043200	Flanking Active TSS	K562	blood
25	chr10:62041600-62044400	Enhancers	NHDF-Ad	bronchial
26	chr10:62041600-62050400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:62041800-62043200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:62041800-62043400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr10:62042000-62043200	Flanking Active TSS	A549	lung
30	chr10:62042000-62047000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:62042200-62042800	Flanking Active TSS	HSMMtube	muscle
32	chr10:62042200-62043000	Enhancers	HMEC	breast
33	chr10:62042200-62043200	Enhancers	HepG2	liver
34	chr10:62042200-62043600	Flanking Active TSS	HUVEC	blood vessel
35	chr10:62042200-62052800	Enhancers	Fetal Heart	heart
36	chr10:62042400-62042800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:62042400-62043200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr10:62042400-62043400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:62042400-62043400	Enhancers	Primary B cells from cord blood	blood
40	chr10:62042400-62043400	Flanking Active TSS	Osteobl	bone
41	chr10:62042400-62045200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr10:62042400-62050400	Weak transcription	Brain Anterior Caudate	brain
43	chr10:62042600-62043000	Active TSS	HSMM	muscle
44	chr10:62042600-62043200	Enhancers	NHEK	skin
45	chr10:62042600-62043400	Flanking Active TSS	NH-A	brain
46	chr10:62042600-62043600	Enhancers	NHLF	lung
47	chr10:62042600-62043800	Weak transcription	Stomach Mucosa	stomach
48	chr10:62042600-62048200	Weak transcription	Brain Angular Gyrus	brain
49	chr10:62042600-62051600	Weak transcription	Aorta	Aorta

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