Variant report

Variant	rs17233871
Chromosome Location	chr10:62058055-62058056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:62055826..62058549-chr10:62072987..62075684,2	K562	blood:
2	chr10:62056983..62059367-chr10:62112966..62115329,2	K562	blood:
3	chr10:62057640..62059903-chr10:62063838..62066618,2	K562	blood:
4	chr10:62056983..62059756-chr10:62111958..62114466,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10821708	0.87[CEU][hapmap]
rs11592290	0.89[CEU][hapmap]
rs11815139	0.88[CEU][hapmap]
rs12769045	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769536	0.94[CEU][hapmap]
rs12769571	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12771158	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12780261	0.88[CEU][hapmap]
rs12781443	0.89[CEU][hapmap];0.84[AMR][1000 genomes]
rs12782314	0.89[CEU][hapmap]
rs12782331	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12782806	0.87[CEU][hapmap]
rs12783491	0.89[CEU][hapmap]
rs1551683	1.00[CHB][hapmap]
rs1551684	1.00[CHB][hapmap]
rs17233781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34397303	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34517433	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35098882	0.81[AMR][1000 genomes]
rs35175163	0.84[AMR][1000 genomes]
rs35204557	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35305500	0.84[AMR][1000 genomes]
rs35412732	0.82[EUR][1000 genomes]
rs35545571	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35590836	0.86[EUR][1000 genomes]
rs35628300	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36080943	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4146140	1.00[YRI][hapmap]
rs4948253	1.00[YRI][hapmap]
rs6479707	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs7072072	0.82[EUR][1000 genomes]
rs7082025	1.00[CHB][hapmap]
rs7090125	0.82[EUR][1000 genomes]
rs7090893	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs7095717	0.94[CEU][hapmap]
rs71495632	0.84[AMR][1000 genomes]
rs71495633	0.82[AMR][1000 genomes]
rs71495635	0.87[AMR][1000 genomes]
rs71495636	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7896287	1.00[CHB][hapmap]
rs7899737	0.82[EUR][1000 genomes]
rs7900123	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs898330	0.89[CEU][hapmap]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62027400-62059800	Weak transcription	Psoas Muscle	Psoas
2	chr10:62050600-62059200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:62051400-62059800	Weak transcription	HSMM	muscle
4	chr10:62051600-62060000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:62051800-62059600	Weak transcription	Aorta	Aorta
6	chr10:62052400-62060400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:62054000-62058200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:62054200-62058800	Weak transcription	Brain Substantia Nigra	brain
9	chr10:62054200-62059200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:62054200-62059200	Weak transcription	Brain Anterior Caudate	brain
11	chr10:62054200-62059200	Weak transcription	HSMMtube	muscle
12	chr10:62054200-62059600	Weak transcription	Osteobl	bone
13	chr10:62054400-62059800	Weak transcription	Fetal Stomach	stomach
14	chr10:62056000-62059200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:62056200-62060000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:62056600-62059800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:62057600-62058600	Active TSS	K562	blood
18	chr10:62057800-62058200	Active TSS	Fetal Brain Female	brain
19	chr10:62057800-62058400	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr10:62057800-62059200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:62057800-62059800	Enhancers	Brain Cingulate Gyrus	brain
22	chr10:62057800-62059800	Enhancers	Brain Hippocampus Middle	brain
23	chr10:62057800-62060600	Enhancers	Fetal Brain Male	brain
24	chr10:62057800-62060600	Active TSS	Fetal Heart	heart
25	chr10:62057800-62060800	Active TSS	Right Atrium	heart
26	chr10:62058000-62058200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:62058000-62058600	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr10:62058000-62058600	Active TSS	Left Ventricle	heart
29	chr10:62058000-62058800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:62058000-62060000	Enhancers	Brain Angular Gyrus	brain
31	chr10:62058000-62060800	Active TSS	Right Ventricle	heart

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