Variant report

Variant	rs7900123
Chromosome Location	chr10:62040133-62040134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:62028565..62031361-chr10:62037925..62040618,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10821708	1.00[CEU][hapmap]
rs11592290	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11815139	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12769536	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12769571	0.81[CEU][hapmap]
rs12770090	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771158	0.81[CEU][hapmap];0.82[GIH][hapmap]
rs12780261	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12781443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782314	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12782806	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12783491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17233781	0.87[CEU][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.84[AMR][1000 genomes]
rs17233871	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs17805456	0.82[MEX][hapmap]
rs35098882	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35175163	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35305500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35545571	0.81[AMR][1000 genomes]
rs35628300	0.81[AMR][1000 genomes]
rs36080943	0.81[AMR][1000 genomes]
rs6479707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090893	1.00[CEU][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095717	0.94[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71495632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495633	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495634	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71495635	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71495636	0.81[AMR][1000 genomes]
rs898330	0.88[CEU][hapmap]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62007000-62040600	Weak transcription	HSMMtube	muscle
2	chr10:62015000-62041800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:62019200-62040800	Weak transcription	Fetal Brain Male	brain
4	chr10:62022400-62040600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:62023200-62040400	Weak transcription	Brain Substantia Nigra	brain
6	chr10:62023200-62041200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:62023200-62043800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:62023200-62053400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:62023600-62040600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:62023600-62041000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:62023600-62041200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:62023800-62040200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:62023800-62040200	Weak transcription	Fetal Intestine Large	intestine
14	chr10:62023800-62040400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:62023800-62040400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:62023800-62040400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:62023800-62040800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:62023800-62040800	Weak transcription	Lung	lung
19	chr10:62023800-62041000	Weak transcription	Spleen	Spleen
20	chr10:62023800-62042000	Weak transcription	Esophagus	oesophagus
21	chr10:62023800-62043800	Weak transcription	Right Ventricle	heart
22	chr10:62023800-62048000	Weak transcription	Fetal Stomach	stomach
23	chr10:62023800-62051600	Weak transcription	Pancreas	Pancrea
24	chr10:62023800-62055800	Weak transcription	Gastric	stomach
25	chr10:62024000-62040200	Weak transcription	Primary T cells from cord blood	blood
26	chr10:62026600-62040600	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:62027400-62059800	Weak transcription	Psoas Muscle	Psoas
28	chr10:62028000-62040800	Weak transcription	Right Atrium	heart
29	chr10:62031000-62040800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:62034400-62040800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:62036400-62040200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:62036600-62040800	Weak transcription	Brain Angular Gyrus	brain
33	chr10:62036800-62040200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:62036800-62040400	Weak transcription	Brain Anterior Caudate	brain
35	chr10:62036800-62041400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:62037200-62040400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr10:62037600-62040200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:62037800-62040200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:62037800-62040400	Weak transcription	Brain Germinal Matrix	brain
40	chr10:62037800-62041000	Weak transcription	NHDF-Ad	bronchial
41	chr10:62038000-62041000	Weak transcription	Osteobl	bone
42	chr10:62039000-62040200	Weak transcription	Fetal Heart	heart
43	chr10:62039000-62040600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:62039000-62040600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr10:62039000-62040600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr10:62039000-62040600	Weak transcription	Left Ventricle	heart
47	chr10:62039000-62040800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr10:62039000-62041200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr10:62039000-62041200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr10:62039000-62044400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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