Variant report

Variant	rs17233781
Chromosome Location	chr10:62053369-62053370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:62052858..62056204-chr10:62056954..62061915,6	K562	blood:
2	chr10:62050779..62053769-chr10:62059214..62061876,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151150	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10821708	0.87[CEU][hapmap]
rs11592290	0.87[CEU][hapmap]
rs11815139	0.87[CEU][hapmap]
rs12769045	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769536	0.88[CEU][hapmap]
rs12769571	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12771158	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12780261	0.87[CEU][hapmap]
rs12781443	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs12782314	0.87[CEU][hapmap]
rs12782331	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12782806	0.87[CEU][hapmap]
rs12783491	0.87[CEU][hapmap]
rs1551683	1.00[CHB][hapmap]
rs1551684	1.00[CHB][hapmap]
rs17233871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34397303	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34517433	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35098882	0.81[AMR][1000 genomes]
rs35175163	0.84[AMR][1000 genomes]
rs35204557	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35305500	0.84[AMR][1000 genomes]
rs35412732	0.82[EUR][1000 genomes]
rs35545571	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35590836	0.86[EUR][1000 genomes]
rs35628300	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36080943	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4146140	1.00[YRI][hapmap]
rs4948253	1.00[YRI][hapmap]
rs6479707	0.87[CEU][hapmap];1.00[MKK][hapmap];0.84[AMR][1000 genomes]
rs7072072	0.82[EUR][1000 genomes]
rs7082025	1.00[CHB][hapmap]
rs7090125	0.82[EUR][1000 genomes]
rs7090893	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs7095717	0.94[CEU][hapmap]
rs71495632	0.84[AMR][1000 genomes]
rs71495633	0.82[AMR][1000 genomes]
rs71495635	0.87[AMR][1000 genomes]
rs71495636	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7896287	1.00[CHB][hapmap]
rs7899737	0.82[EUR][1000 genomes]
rs7900123	0.87[CEU][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];0.84[AMR][1000 genomes]
rs898330	0.88[CEU][hapmap]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62023200-62053400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:62023800-62055800	Weak transcription	Gastric	stomach
3	chr10:62027400-62059800	Weak transcription	Psoas Muscle	Psoas
4	chr10:62049400-62054600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:62050600-62054000	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:62050600-62059200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:62050800-62053400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:62051400-62059800	Weak transcription	HSMM	muscle
9	chr10:62051600-62060000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:62051800-62053400	Weak transcription	Small Intestine	intestine
11	chr10:62051800-62054000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:62051800-62054000	Weak transcription	Left Ventricle	heart
13	chr10:62051800-62055200	Weak transcription	Right Ventricle	heart
14	chr10:62051800-62059600	Weak transcription	Aorta	Aorta
15	chr10:62052200-62054400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:62052200-62054400	Enhancers	Fetal Lung	lung
17	chr10:62052400-62053400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:62052400-62054400	Enhancers	Fetal Stomach	stomach
19	chr10:62052400-62060400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:62052600-62054200	Enhancers	Brain Hippocampus Middle	brain
21	chr10:62052800-62053400	Enhancers	Brain Angular Gyrus	brain
22	chr10:62052800-62053800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:62052800-62053800	Enhancers	NHLF	lung
24	chr10:62052800-62054200	Enhancers	Brain Substantia Nigra	brain
25	chr10:62052800-62054200	Enhancers	HSMMtube	muscle
26	chr10:62052800-62054800	Enhancers	K562	blood
27	chr10:62052800-62055800	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr10:62053000-62053400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:62053000-62053400	Flanking Active TSS	Fetal Brain Male	brain
30	chr10:62053000-62053400	Enhancers	Fetal Heart	heart
31	chr10:62053000-62053400	Active TSS	Ovary	ovary
32	chr10:62053000-62053600	Active TSS	Right Atrium	heart
33	chr10:62053000-62054200	Enhancers	Brain Anterior Caudate	brain
34	chr10:62053000-62054200	Enhancers	Fetal Brain Female	brain
35	chr10:62053000-62054200	Enhancers	Osteobl	bone
36	chr10:62053000-62055200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:62053000-62056000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:62053200-62053400	Enhancers	Stomach Mucosa	stomach

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