Variant report

Variant	rs36080943
Chromosome Location	chr10:62067247-62067248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:62062443..62064714-chr10:62066486..62068659,2	K562	blood:
2	chr10:61842103..61843866-chr10:62065203..62067692,2	K562	blood:

Variant related genes	Relation type
ENSG00000151150	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12769045	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12769571	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771158	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12781443	0.81[AMR][1000 genomes]
rs12782331	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551683	1.00[ASN][1000 genomes]
rs1551684	0.83[ASN][1000 genomes]
rs17233781	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17233871	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34397303	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34517433	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35175163	0.81[AMR][1000 genomes]
rs35204557	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35305500	0.81[AMR][1000 genomes]
rs35412732	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35545571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35590836	0.93[EUR][1000 genomes]
rs35628300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479707	0.81[AMR][1000 genomes]
rs7072072	0.89[EUR][1000 genomes]
rs7082025	1.00[ASN][1000 genomes]
rs7090125	0.89[EUR][1000 genomes]
rs7090893	0.81[AMR][1000 genomes]
rs7100330	1.00[ASN][1000 genomes]
rs71495632	0.81[AMR][1000 genomes]
rs71495635	0.84[AMR][1000 genomes]
rs71495636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806129	1.00[ASN][1000 genomes]
rs72806131	1.00[ASN][1000 genomes]
rs72806132	1.00[ASN][1000 genomes]
rs72806133	1.00[ASN][1000 genomes]
rs72806134	1.00[ASN][1000 genomes]
rs72806135	1.00[ASN][1000 genomes]
rs72806140	1.00[ASN][1000 genomes]
rs72806146	1.00[ASN][1000 genomes]
rs72806149	1.00[ASN][1000 genomes]
rs72806151	1.00[ASN][1000 genomes]
rs72806156	1.00[ASN][1000 genomes]
rs72806158	1.00[ASN][1000 genomes]
rs72806159	1.00[ASN][1000 genomes]
rs72806162	1.00[ASN][1000 genomes]
rs7896287	1.00[ASN][1000 genomes]
rs7899737	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900123	0.81[AMR][1000 genomes]
rs7907761	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv275322	chr10:62066499-62070650	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62060600-62067600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:62060800-62073400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:62065000-62081400	Weak transcription	Right Atrium	heart
4	chr10:62065200-62067400	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:62065200-62070600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:62065200-62072600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:62065400-62070000	Weak transcription	Fetal Heart	heart
8	chr10:62065400-62070400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:62065600-62072200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:62065800-62070200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:62065800-62072600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:62065800-62073200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:62065800-62078200	Weak transcription	Brain Substantia Nigra	brain
14	chr10:62066000-62067400	Weak transcription	NHDF-Ad	bronchial
15	chr10:62066000-62067600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:62066200-62070600	Weak transcription	K562	blood
17	chr10:62066800-62077000	Weak transcription	Pancreas	Pancrea
18	chr10:62067000-62067400	Weak transcription	Brain Angular Gyrus	brain
19	chr10:62067000-62068000	Enhancers	Brain Cingulate Gyrus	brain

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