Variant report

Variant	rs72806140
Chromosome Location	chr10:62154684-62154685
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:62141555..62143240-chr10:62154160..62157030,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12769571	1.00[ASN][1000 genomes]
rs12771158	1.00[ASN][1000 genomes]
rs12782331	1.00[ASN][1000 genomes]
rs1551683	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551684	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34517433	1.00[ASN][1000 genomes]
rs35204557	1.00[ASN][1000 genomes]
rs35412732	1.00[ASN][1000 genomes]
rs35545571	1.00[ASN][1000 genomes]
rs35628300	1.00[ASN][1000 genomes]
rs36080943	1.00[ASN][1000 genomes]
rs4072839	0.82[EUR][1000 genomes]
rs57679969	0.82[EUR][1000 genomes]
rs7082025	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099869	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7100330	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495636	1.00[ASN][1000 genomes]
rs72806126	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72806129	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806131	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806132	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806133	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806134	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806135	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806146	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806149	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806151	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806156	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806158	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806159	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806162	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896287	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899737	1.00[ASN][1000 genomes]
rs7907761	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62145000-62159000	Weak transcription	Ovary	ovary
2	chr10:62146000-62156800	Weak transcription	A549	lung
3	chr10:62146000-62157200	Weak transcription	Gastric	stomach
4	chr10:62146000-62159000	Weak transcription	Psoas Muscle	Psoas
5	chr10:62149600-62157000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:62149600-62157600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:62151200-62155400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:62152200-62156000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:62152600-62158600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:62153400-62154800	Enhancers	Brain Substantia Nigra	brain
11	chr10:62153600-62154800	Enhancers	Brain Hippocampus Middle	brain
12	chr10:62153600-62156200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:62154200-62154800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:62154200-62154800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:62154200-62155800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr10:62154600-62155400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:62154600-62155600	Weak transcription	Brain Anterior Caudate	brain
18	chr10:62154600-62157000	Weak transcription	Brain Angular Gyrus	brain
19	chr10:62154600-62158400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:62154600-62159000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:62154600-62159000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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