Variant report

Variant	rs4072839
Chromosome Location	chr10:62192301-62192302
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:62186474..62189064-chr10:62190381..62193642,3	K562	blood:
2	chr10:62188734..62191423-chr10:62192248..62193801,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1551683	0.82[EUR][1000 genomes]
rs1551684	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57679969	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7082025	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7099869	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7100330	0.82[EUR][1000 genomes]
rs72806129	0.82[EUR][1000 genomes]
rs72806132	0.82[EUR][1000 genomes]
rs72806133	0.82[EUR][1000 genomes]
rs72806134	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72806135	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72806140	0.82[EUR][1000 genomes]
rs72806146	0.82[EUR][1000 genomes]
rs72806149	0.82[EUR][1000 genomes]
rs72806151	0.82[EUR][1000 genomes]
rs72806156	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72806158	0.82[EUR][1000 genomes]
rs72806159	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72806162	0.82[EUR][1000 genomes]
rs7896287	0.82[EUR][1000 genomes]
rs7907761	0.82[EUR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62171600-62206200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr10:62184000-62206200	Weak transcription	Primary T cells from cord blood	blood
3	chr10:62184000-62206600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:62186800-62193000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:62186800-62193800	Enhancers	NH-A	brain
6	chr10:62189800-62193400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:62190200-62192800	Weak transcription	Aorta	Aorta
8	chr10:62190200-62193400	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:62190200-62193400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:62190200-62193600	Weak transcription	Brain Substantia Nigra	brain
11	chr10:62190200-62205600	Weak transcription	Left Ventricle	heart
12	chr10:62190400-62192800	Weak transcription	Brain Angular Gyrus	brain
13	chr10:62190400-62192800	Weak transcription	Fetal Heart	heart
14	chr10:62190400-62193200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:62190400-62193200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:62190400-62193200	Weak transcription	HSMMtube	muscle
17	chr10:62190400-62193200	Weak transcription	HUVEC	blood vessel
18	chr10:62190400-62193400	Weak transcription	Fetal Lung	lung
19	chr10:62190400-62193400	Weak transcription	NHLF	lung
20	chr10:62190600-62196800	Weak transcription	Brain Anterior Caudate	brain
21	chr10:62190800-62193200	Weak transcription	HSMM	muscle
22	chr10:62190800-62193400	Weak transcription	A549	lung
23	chr10:62191000-62193400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr10:62191200-62192600	Weak transcription	Osteobl	bone
25	chr10:62191200-62192800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:62191200-62192800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:62191200-62192800	Weak transcription	NHDF-Ad	bronchial
28	chr10:62191200-62193200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:62191200-62193200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:62191200-62193400	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:62191400-62192600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr10:62191800-62193200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:62192200-62193400	Weak transcription	Rectal Mucosa Donor 29	rectum

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