Variant report

Variant	rs7100330
Chromosome Location	chr10:62170627-62170628
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12769571	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12771158	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12782331	1.00[ASN][1000 genomes]
rs1551683	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551684	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17233781	1.00[CHB][hapmap]
rs17233871	1.00[CHB][hapmap]
rs34517433	1.00[ASN][1000 genomes]
rs35204557	1.00[ASN][1000 genomes]
rs35412732	1.00[ASN][1000 genomes]
rs35545571	1.00[ASN][1000 genomes]
rs35628300	1.00[ASN][1000 genomes]
rs36080943	1.00[ASN][1000 genomes]
rs4072839	0.82[EUR][1000 genomes]
rs57679969	0.82[EUR][1000 genomes]
rs7082025	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099869	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71495636	1.00[ASN][1000 genomes]
rs72806126	0.90[EUR][1000 genomes]
rs72806129	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806131	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806132	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806133	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806134	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806135	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806140	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806146	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806149	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806151	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806156	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806159	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806162	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896287	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899737	1.00[ASN][1000 genomes]
rs7907761	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62159400-62172600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:62159600-62187600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:62159800-62173600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:62168000-62171400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:62168600-62170800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:62168800-62180000	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:62169000-62177800	Weak transcription	Brain Anterior Caudate	brain
8	chr10:62170400-62171400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:62170600-62170800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:62170600-62171200	Enhancers	NH-A	brain
11	chr10:62170600-62171400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:62170600-62171400	Enhancers	Hela-S3	cervix
13	chr10:62170600-62171400	Enhancers	Osteobl	bone
14	chr10:62170600-62171600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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