Variant report

Variant	rs35412732
Chromosome Location	chr10:62061910-62061911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr10:62061896-62061972	K562	blood:	n/a	n/a

Variant related genes	Relation type
ANK3	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12769045	0.80[EUR][1000 genomes]
rs12769571	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771158	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782331	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551683	1.00[ASN][1000 genomes]
rs1551684	0.83[ASN][1000 genomes]
rs17233781	0.82[EUR][1000 genomes]
rs17233871	0.82[EUR][1000 genomes]
rs34397303	0.81[EUR][1000 genomes]
rs34517433	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35204557	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35545571	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35590836	0.84[EUR][1000 genomes]
rs35628300	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36080943	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072072	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7082025	1.00[ASN][1000 genomes]
rs7090125	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7100330	1.00[ASN][1000 genomes]
rs71495636	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806129	1.00[ASN][1000 genomes]
rs72806131	1.00[ASN][1000 genomes]
rs72806132	1.00[ASN][1000 genomes]
rs72806133	1.00[ASN][1000 genomes]
rs72806134	1.00[ASN][1000 genomes]
rs72806135	1.00[ASN][1000 genomes]
rs72806140	1.00[ASN][1000 genomes]
rs72806146	1.00[ASN][1000 genomes]
rs72806149	1.00[ASN][1000 genomes]
rs72806151	1.00[ASN][1000 genomes]
rs72806156	1.00[ASN][1000 genomes]
rs72806158	1.00[ASN][1000 genomes]
rs72806159	1.00[ASN][1000 genomes]
rs72806162	1.00[ASN][1000 genomes]
rs7896287	1.00[ASN][1000 genomes]
rs7899737	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907761	1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62060400-62065000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:62060600-62062000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr10:62060600-62067600	Weak transcription	Brain Anterior Caudate	brain
4	chr10:62060800-62064400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:62060800-62064400	Weak transcription	HUVEC	blood vessel
6	chr10:62060800-62064400	Weak transcription	K562	blood
7	chr10:62060800-62064600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:62060800-62064600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:62060800-62064600	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:62060800-62064600	Weak transcription	Right Atrium	heart
11	chr10:62060800-62064600	Weak transcription	Osteobl	bone
12	chr10:62060800-62065000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:62060800-62065000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:62060800-62065000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:62060800-62066800	Weak transcription	Brain Angular Gyrus	brain
16	chr10:62060800-62073400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:62061600-62064600	Weak transcription	NH-A	brain
18	chr10:62061800-62064800	Weak transcription	Fetal Heart	heart
19	chr10:62061800-62065000	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links