Variant report

Variant	rs72806133
Chromosome Location	chr10:62146403-62146404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:62146342..62148411-chr10:62155155..62157174,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12769571	1.00[ASN][1000 genomes]
rs12771158	1.00[ASN][1000 genomes]
rs12782331	1.00[ASN][1000 genomes]
rs1551683	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551684	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34517433	1.00[ASN][1000 genomes]
rs35204557	1.00[ASN][1000 genomes]
rs35412732	1.00[ASN][1000 genomes]
rs35545571	1.00[ASN][1000 genomes]
rs35628300	1.00[ASN][1000 genomes]
rs36080943	1.00[ASN][1000 genomes]
rs4072839	0.82[EUR][1000 genomes]
rs57679969	0.82[EUR][1000 genomes]
rs7082025	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099869	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7100330	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495636	1.00[ASN][1000 genomes]
rs72806126	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72806129	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806134	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806135	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806140	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806146	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806149	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806151	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806156	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806158	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806159	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806162	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896287	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899737	1.00[ASN][1000 genomes]
rs7907761	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62143000-62146600	Enhancers	Brain Substantia Nigra	brain
2	chr10:62145000-62148800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:62145000-62148800	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:62145000-62148800	Weak transcription	Pancreas	Pancrea
5	chr10:62145000-62148800	Weak transcription	Spleen	Spleen
6	chr10:62145000-62154400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:62145000-62159000	Weak transcription	Ovary	ovary
8	chr10:62145200-62148600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:62145200-62148800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:62145200-62148800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:62145200-62149200	Weak transcription	Aorta	Aorta
12	chr10:62145400-62148600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:62145400-62150000	Weak transcription	Osteobl	bone
14	chr10:62145400-62150400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:62145600-62148400	Weak transcription	NH-A	brain
16	chr10:62145600-62150000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:62145600-62150000	Weak transcription	NHLF	lung
18	chr10:62145600-62154200	Weak transcription	HSMM	muscle
19	chr10:62145800-62147400	Weak transcription	HUVEC	blood vessel
20	chr10:62145800-62149800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:62146000-62147200	Weak transcription	Fetal Brain Female	brain
22	chr10:62146000-62147600	Weak transcription	Fetal Brain Male	brain
23	chr10:62146000-62147800	Weak transcription	Stomach Mucosa	stomach
24	chr10:62146000-62148200	Weak transcription	NHDF-Ad	bronchial
25	chr10:62146000-62149400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:62146000-62150000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:62146000-62150200	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr10:62146000-62154200	Weak transcription	Esophagus	oesophagus
29	chr10:62146000-62154200	Weak transcription	Right Atrium	heart
30	chr10:62146000-62156800	Weak transcription	A549	lung
31	chr10:62146000-62157200	Weak transcription	Gastric	stomach
32	chr10:62146000-62159000	Weak transcription	Psoas Muscle	Psoas
33	chr10:62146200-62146800	Enhancers	Brain Angular Gyrus	brain
34	chr10:62146200-62147200	Weak transcription	Brain Anterior Caudate	brain
35	chr10:62146200-62150800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:62146400-62146600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:62146400-62147000	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:62146400-62148600	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links