Variant report

Variant	rs1551684
Chromosome Location	chr10:62150203-62150204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr10:62150162-62150213	K562	blood:	n/a	n/a
2	CEBPB	chr10:62149904-62150309	IMR90	lung:	n/a	n/a
3	POLR2A	chr10:62149875-62150514	H1-neurons	neurons:	n/a	n/a
4	FOS	chr10:62150089-62150271	MCF10A-Er-Src	breast:	n/a	chr10:62150186-62150198 chr10:62150187-62150197 chr10:62150187-62150197 chr10:62150187-62150197 chr10:62150188-62150196
5	POLR2A	chr10:62150082-62150497	H1-neurons	neurons:	n/a	n/a
6	FOS	chr10:62149954-62150220	MCF10A-Er-Src	breast:	n/a	chr10:62150186-62150198 chr10:62150187-62150197 chr10:62150187-62150197 chr10:62150187-62150197 chr10:62150188-62150196
7	FOS	chr10:62150042-62150245	MCF10A-Er-Src	breast:	n/a	chr10:62150186-62150198 chr10:62150187-62150197 chr10:62150187-62150197 chr10:62150187-62150197 chr10:62150188-62150196
8	FOS	chr10:62150118-62150239	MCF10A-Er-Src	breast:	n/a	chr10:62150186-62150198 chr10:62150187-62150197 chr10:62150187-62150197 chr10:62150187-62150197 chr10:62150188-62150196
9	RCOR1	chr10:62150044-62150270	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:62070583..62073362-chr10:62149551..62151844,2	K562	blood:

Variant related genes	Relation type
ANK3	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12769571	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12771158	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12782331	0.83[ASN][1000 genomes]
rs1551683	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17233781	1.00[CHB][hapmap]
rs17233871	1.00[CHB][hapmap]
rs34517433	0.83[ASN][1000 genomes]
rs35204557	0.83[ASN][1000 genomes]
rs35412732	0.83[ASN][1000 genomes]
rs35545571	0.83[ASN][1000 genomes]
rs35628300	0.83[ASN][1000 genomes]
rs36080943	0.83[ASN][1000 genomes]
rs4072839	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57679969	0.82[EUR][1000 genomes]
rs7082025	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7090182	1.00[YRI][hapmap]
rs7090898	0.88[YRI][hapmap]
rs7099869	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7100330	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71495636	0.83[ASN][1000 genomes]
rs72806126	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72806129	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806131	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806132	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806133	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806140	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806146	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806149	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806151	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806156	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806158	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806159	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72806162	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7896287	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7899737	0.83[ASN][1000 genomes]
rs7907761	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62145000-62154400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:62145000-62159000	Weak transcription	Ovary	ovary
3	chr10:62145400-62150400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:62145600-62154200	Weak transcription	HSMM	muscle
5	chr10:62146000-62154200	Weak transcription	Esophagus	oesophagus
6	chr10:62146000-62154200	Weak transcription	Right Atrium	heart
7	chr10:62146000-62156800	Weak transcription	A549	lung
8	chr10:62146000-62157200	Weak transcription	Gastric	stomach
9	chr10:62146000-62159000	Weak transcription	Psoas Muscle	Psoas
10	chr10:62146200-62150800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:62147200-62151200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:62147400-62151000	Enhancers	HUVEC	blood vessel
13	chr10:62148400-62150400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:62148400-62150400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr10:62148400-62150800	Enhancers	NH-A	brain
16	chr10:62148600-62150400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:62148600-62150600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:62148600-62150800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:62148600-62151000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr10:62148600-62154200	Weak transcription	NHDF-Ad	bronchial
21	chr10:62148800-62150800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:62148800-62150800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr10:62148800-62154200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:62149000-62151200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:62149000-62154200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr10:62149000-62154200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:62149000-62154200	Weak transcription	Spleen	Spleen
28	chr10:62149200-62154000	Weak transcription	Primary T cells from cord blood	blood
29	chr10:62149400-62150600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:62149400-62151000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:62149600-62150400	Enhancers	Brain Germinal Matrix	brain
32	chr10:62149600-62150600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr10:62149600-62150800	Enhancers	Fetal Brain Male	brain
34	chr10:62149600-62154200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:62149600-62157000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr10:62149600-62157600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr10:62149800-62150400	Enhancers	Muscle Satellite Cultured Cells	--
38	chr10:62149800-62150600	Weak transcription	Brain Substantia Nigra	brain
39	chr10:62149800-62151800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:62149800-62154200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:62150000-62150400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:62150000-62150400	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr10:62150000-62150400	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr10:62150000-62150400	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr10:62150000-62150400	Enhancers	Osteobl	bone
46	chr10:62150000-62150800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:62150000-62150800	Enhancers	NHLF	lung
48	chr10:62150200-62150400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr10:62150200-62150400	Active TSS	Brain Angular Gyrus	brain
50	chr10:62150200-62150400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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