Variant report

Variant	rs72806146
Chromosome Location	chr10:62159351-62159352
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:62151901..62154591-chr10:62158210..62160811,2	K562	blood:
2	chr10:62157759..62159880-chr10:62645496..62647992,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12769571	1.00[ASN][1000 genomes]
rs12771158	1.00[ASN][1000 genomes]
rs12782331	1.00[ASN][1000 genomes]
rs1551683	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551684	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34517433	1.00[ASN][1000 genomes]
rs35204557	1.00[ASN][1000 genomes]
rs35412732	1.00[ASN][1000 genomes]
rs35545571	1.00[ASN][1000 genomes]
rs35628300	1.00[ASN][1000 genomes]
rs36080943	1.00[ASN][1000 genomes]
rs4072839	0.82[EUR][1000 genomes]
rs57679969	0.82[EUR][1000 genomes]
rs7082025	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099869	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7100330	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495636	1.00[ASN][1000 genomes]
rs72806126	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72806129	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806131	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806132	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806133	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806134	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806135	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806140	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806149	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806151	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806156	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806158	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806159	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806162	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896287	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899737	1.00[ASN][1000 genomes]
rs7907761	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62155400-62165000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr10:62157000-62159800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:62157000-62159800	Enhancers	NHEK	skin
4	chr10:62157200-62159600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:62157600-62170600	Weak transcription	NH-A	brain
6	chr10:62158000-62160000	Enhancers	Fetal Brain Male	brain
7	chr10:62158600-62159400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:62158600-62159400	Enhancers	Brain Germinal Matrix	brain
9	chr10:62158600-62159600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:62158600-62159600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr10:62158800-62159600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:62158800-62160000	Enhancers	Fetal Heart	heart
13	chr10:62158800-62160000	Enhancers	HMEC	breast
14	chr10:62159000-62159400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr10:62159000-62159400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:62159000-62159400	Enhancers	Ovary	ovary
17	chr10:62159000-62159400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr10:62159000-62159600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:62159000-62159800	Enhancers	Brain Substantia Nigra	brain
20	chr10:62159000-62160200	Enhancers	Brain Cingulate Gyrus	brain
21	chr10:62159000-62160400	Enhancers	Fetal Brain Female	brain
22	chr10:62159200-62159400	Flanking Active TSS	Psoas Muscle	Psoas
23	chr10:62159200-62159400	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr10:62159200-62159600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr10:62159200-62159600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:62159200-62159600	Enhancers	Left Ventricle	heart

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