Variant report

Variant	rs7896287
Chromosome Location	chr10:62143794-62143795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:62140904..62143809-chr10:62152084..62153644,2	K562	blood:
2	chr10:62107932..62110170-chr10:62143779..62145564,2	K562	blood:
3	chr10:62134131..62136448-chr10:62142813..62145515,2	K562	blood:
4	chr10:62143206..62144981-chr10:62164719..62167070,2	MCF-7	breast:
5	chr10:62056251..62057800-chr10:62142313..62145305,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12769571	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12771158	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12782331	1.00[ASN][1000 genomes]
rs1551683	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551684	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17233781	1.00[CHB][hapmap]
rs17233871	1.00[CHB][hapmap]
rs34517433	1.00[ASN][1000 genomes]
rs35204557	1.00[ASN][1000 genomes]
rs35412732	1.00[ASN][1000 genomes]
rs35545571	1.00[ASN][1000 genomes]
rs35628300	1.00[ASN][1000 genomes]
rs36080943	1.00[ASN][1000 genomes]
rs4072839	0.82[EUR][1000 genomes]
rs57679969	0.82[EUR][1000 genomes]
rs7072072	0.82[GIH][hapmap]
rs7082025	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090182	1.00[YRI][hapmap]
rs7090898	0.88[YRI][hapmap]
rs7099869	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7100330	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495636	1.00[ASN][1000 genomes]
rs72806126	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72806129	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806131	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806132	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806133	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806134	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806135	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806140	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806146	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806149	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806151	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806156	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806158	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806159	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806162	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899737	1.00[ASN][1000 genomes]
rs7907761	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62129200-62144400	Weak transcription	Fetal Brain Female	brain
2	chr10:62136600-62144800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:62137000-62144600	Weak transcription	Esophagus	oesophagus
4	chr10:62140200-62144200	Enhancers	Brain Hippocampus Middle	brain
5	chr10:62140800-62144400	Weak transcription	Fetal Heart	heart
6	chr10:62142800-62144200	Enhancers	Brain Cingulate Gyrus	brain
7	chr10:62142800-62144200	Enhancers	A549	lung
8	chr10:62142800-62144800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:62142800-62144800	Enhancers	HSMM	muscle
10	chr10:62142800-62144800	Enhancers	NH-A	brain
11	chr10:62142800-62145000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:62142800-62145400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:62142800-62145400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:62142800-62145400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:62142800-62145400	Enhancers	Osteobl	bone
16	chr10:62142800-62145600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:62142800-62145600	Enhancers	NHLF	lung
18	chr10:62142800-62145800	Enhancers	HUVEC	blood vessel
19	chr10:62142800-62145800	Enhancers	NHEK	skin
20	chr10:62142800-62146000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:62142800-62146000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:62142800-62146000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:62143000-62144400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr10:62143000-62144600	Enhancers	Brain Angular Gyrus	brain
25	chr10:62143000-62145400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:62143000-62145400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:62143000-62145400	Enhancers	Hela-S3	cervix
28	chr10:62143000-62146000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:62143000-62146000	Enhancers	HMEC	breast
30	chr10:62143000-62146000	Enhancers	NHDF-Ad	bronchial
31	chr10:62143000-62146600	Enhancers	Brain Substantia Nigra	brain
32	chr10:62143200-62145200	Enhancers	Aorta	Aorta
33	chr10:62143200-62145400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:62143400-62144200	Weak transcription	Brain Anterior Caudate	brain
35	chr10:62143600-62145200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links