Variant report

Variant	rs34397303
Chromosome Location	chr10:62053692-62053693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:62052858..62056204-chr10:62056954..62061915,6	K562	blood:
2	chr10:62050779..62053769-chr10:62059214..62061876,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151150	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12769045	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769571	0.89[EUR][1000 genomes]
rs12771158	0.90[EUR][1000 genomes]
rs12782331	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17233781	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17233871	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34517433	0.90[EUR][1000 genomes]
rs35204557	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35412732	0.81[EUR][1000 genomes]
rs35545571	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35590836	0.84[EUR][1000 genomes]
rs35628300	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36080943	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7072072	0.81[EUR][1000 genomes]
rs7090125	0.81[EUR][1000 genomes]
rs71495635	0.80[AMR][1000 genomes]
rs71495636	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7899737	0.81[EUR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:62023800-62055800	Weak transcription	Gastric	stomach
2	chr10:62027400-62059800	Weak transcription	Psoas Muscle	Psoas
3	chr10:62049400-62054600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:62050600-62054000	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:62050600-62059200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:62051400-62059800	Weak transcription	HSMM	muscle
7	chr10:62051600-62060000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:62051800-62054000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:62051800-62054000	Weak transcription	Left Ventricle	heart
10	chr10:62051800-62055200	Weak transcription	Right Ventricle	heart
11	chr10:62051800-62059600	Weak transcription	Aorta	Aorta
12	chr10:62052200-62054400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:62052200-62054400	Enhancers	Fetal Lung	lung
14	chr10:62052400-62054400	Enhancers	Fetal Stomach	stomach
15	chr10:62052400-62060400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:62052600-62054200	Enhancers	Brain Hippocampus Middle	brain
17	chr10:62052800-62053800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:62052800-62053800	Enhancers	NHLF	lung
19	chr10:62052800-62054200	Enhancers	Brain Substantia Nigra	brain
20	chr10:62052800-62054200	Enhancers	HSMMtube	muscle
21	chr10:62052800-62054800	Enhancers	K562	blood
22	chr10:62052800-62055800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr10:62053000-62054200	Enhancers	Brain Anterior Caudate	brain
24	chr10:62053000-62054200	Enhancers	Fetal Brain Female	brain
25	chr10:62053000-62054200	Enhancers	Osteobl	bone
26	chr10:62053000-62055200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr10:62053000-62056000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:62053400-62053800	Weak transcription	Brain Angular Gyrus	brain
29	chr10:62053400-62053800	Flanking Active TSS	Fetal Heart	heart
30	chr10:62053400-62054200	Enhancers	Muscle Satellite Cultured Cells	--
31	chr10:62053400-62054200	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr10:62053400-62054200	Enhancers	Small Intestine	intestine
33	chr10:62053400-62054400	Enhancers	Fetal Brain Male	brain
34	chr10:62053400-62055800	Weak transcription	Stomach Mucosa	stomach
35	chr10:62053600-62054000	Active TSS	Stomach Smooth Muscle	stomach
36	chr10:62053600-62055200	Weak transcription	Right Atrium	heart

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