Variant report

Variant	rs6479707
Chromosome Location	chr10:62018535-62018536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:62017499..62019024-chr10:62020454..62022115,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10821708	1.00[CEU][hapmap]
rs11592290	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11815139	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12769536	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12769571	0.81[CEU][hapmap]
rs12770090	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771158	0.81[CEU][hapmap]
rs12780261	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12781443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782314	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12782806	1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12783491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17233781	0.87[CEU][hapmap];1.00[MKK][hapmap];0.84[AMR][1000 genomes]
rs17233871	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs35098882	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35175163	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35305500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35545571	0.81[AMR][1000 genomes]
rs35628300	0.81[AMR][1000 genomes]
rs36080943	0.81[AMR][1000 genomes]
rs7090893	1.00[CEU][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095717	0.94[CEU][hapmap];0.91[GIH][hapmap];0.86[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71495632	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495633	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495634	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71495635	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71495636	0.81[AMR][1000 genomes]
rs7900123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898330	0.88[CEU][hapmap]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61960400-62023000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:61998800-62020200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:61998800-62020200	Weak transcription	Ovary	ovary
4	chr10:61999200-62020600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:61999600-62022400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:62006600-62022400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:62007000-62040600	Weak transcription	HSMMtube	muscle
8	chr10:62008600-62020800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr10:62009600-62020200	Weak transcription	Esophagus	oesophagus
10	chr10:62010800-62020000	Weak transcription	Primary T cells from cord blood	blood
11	chr10:62012800-62023000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:62013200-62023000	Weak transcription	Gastric	stomach
13	chr10:62013200-62023000	Weak transcription	Right Ventricle	heart
14	chr10:62013200-62023400	Weak transcription	Pancreas	Pancrea
15	chr10:62014400-62022200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:62014400-62037400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:62014600-62022600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:62014800-62031000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr10:62015000-62022600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:62015000-62041800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:62015200-62034000	Weak transcription	Small Intestine	intestine
22	chr10:62016600-62020000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr10:62016800-62020400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:62016800-62020600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:62017000-62018800	Enhancers	Fetal Intestine Large	intestine
26	chr10:62017000-62018800	Enhancers	Fetal Intestine Small	intestine
27	chr10:62017000-62019000	Enhancers	Brain Angular Gyrus	brain
28	chr10:62017000-62023000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr10:62017200-62019400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr10:62017200-62020400	Enhancers	Brain Cingulate Gyrus	brain
31	chr10:62017200-62020600	Enhancers	Brain Hippocampus Middle	brain
32	chr10:62017400-62018800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:62017400-62019200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr10:62017400-62019600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr10:62017600-62018600	Enhancers	Adipose Nuclei	Adipose
36	chr10:62017600-62018800	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr10:62017600-62019000	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr10:62017600-62019000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:62017600-62019200	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr10:62017600-62019400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:62017600-62019600	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr10:62017600-62019800	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr10:62017800-62018800	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr10:62017800-62019000	Enhancers	H1 Cell Line	embryonic stem cell
45	chr10:62017800-62019000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:62017800-62019000	Enhancers	Brain Germinal Matrix	brain
47	chr10:62017800-62019200	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr10:62017800-62019800	Enhancers	Brain Substantia Nigra	brain
49	chr10:62017800-62020800	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr10:62018000-62018600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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