Variant report

Variant	rs7090893
Chromosome Location	chr10:62016923-62016924
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10821708	1.00[CEU][hapmap]
rs11592290	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11815139	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12769536	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12769571	0.81[CEU][hapmap]
rs12770090	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771158	0.81[CEU][hapmap]
rs12780261	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12781443	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782314	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12782806	1.00[CEU][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12783491	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17233781	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs17233871	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs35098882	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35175163	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35305500	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35545571	0.81[AMR][1000 genomes]
rs35628300	0.81[AMR][1000 genomes]
rs36080943	0.81[AMR][1000 genomes]
rs3750800	1.00[LWK][hapmap]
rs6479707	1.00[CEU][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095717	0.94[CEU][hapmap];0.82[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71495632	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495633	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495634	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71495635	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71495636	0.81[AMR][1000 genomes]
rs7900123	1.00[CEU][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898330	0.88[CEU][hapmap]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61960400-62023000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:61998600-62018400	Weak transcription	Left Ventricle	heart
3	chr10:61998800-62020200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:61998800-62020200	Weak transcription	Ovary	ovary
5	chr10:61999200-62020600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:61999600-62022400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr10:62006600-62022400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:62007000-62017800	Weak transcription	Brain Substantia Nigra	brain
9	chr10:62007000-62040600	Weak transcription	HSMMtube	muscle
10	chr10:62008600-62020800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr10:62009600-62020200	Weak transcription	Esophagus	oesophagus
12	chr10:62009800-62018000	Weak transcription	Fetal Brain Female	brain
13	chr10:62010800-62020000	Weak transcription	Primary T cells from cord blood	blood
14	chr10:62012800-62018000	Weak transcription	Brain Anterior Caudate	brain
15	chr10:62012800-62018200	Weak transcription	Fetal Heart	heart
16	chr10:62012800-62023000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:62013000-62018200	Weak transcription	Fetal Brain Male	brain
18	chr10:62013200-62017000	Weak transcription	Brain Angular Gyrus	brain
19	chr10:62013200-62017200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:62013200-62017600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:62013200-62023000	Weak transcription	Gastric	stomach
22	chr10:62013200-62023000	Weak transcription	Right Ventricle	heart
23	chr10:62013200-62023400	Weak transcription	Pancreas	Pancrea
24	chr10:62013400-62017200	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:62013600-62017600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:62014400-62022200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:62014400-62037400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:62014600-62017000	Weak transcription	Fetal Intestine Small	intestine
29	chr10:62014600-62022600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:62014800-62031000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr10:62015000-62022600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:62015000-62041800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:62015200-62034000	Weak transcription	Small Intestine	intestine
34	chr10:62016600-62020000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:62016800-62017000	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr10:62016800-62017400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:62016800-62020400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:62016800-62020600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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