Variant report

Variant	rs12891351
Chromosome Location	chr14:69848675-69848676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69837007..69840981-chr14:69846953..69850536,4	K562	blood:
2	chr14:69848093..69849674-chr14:69853487..69856466,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10083335	0.80[AMR][1000 genomes]
rs10129720	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10140273	0.85[AMR][1000 genomes]
rs10142144	0.84[AMR][1000 genomes]
rs10143710	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11623094	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2100489	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2124192	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28879441	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34450502	0.87[AMR][1000 genomes]
rs3759770	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4902719	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7150586	0.99[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8015425	0.80[AMR][1000 genomes]
rs8020817	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs959242	0.80[AMR][1000 genomes]
rs9796392	0.82[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12891351	SLC39A9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69821800-69852400	Weak transcription	Spleen	Spleen
2	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:69831200-69852400	Weak transcription	Brain Substantia Nigra	brain
4	chr14:69835400-69851800	Weak transcription	Psoas Muscle	Psoas
5	chr14:69835600-69851600	Weak transcription	Pancreas	Pancrea
6	chr14:69835800-69852400	Weak transcription	Small Intestine	intestine
7	chr14:69836800-69851600	Weak transcription	Gastric	stomach
8	chr14:69837200-69860000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:69837400-69851000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:69839200-69852200	Weak transcription	Aorta	Aorta
11	chr14:69839800-69851600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:69840800-69851600	Weak transcription	Colonic Mucosa	Colon
13	chr14:69840800-69852400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:69841000-69863400	Strong transcription	A549	lung
15	chr14:69841200-69863000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:69841400-69862800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:69841600-69858000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:69841600-69863400	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:69841800-69849800	Strong transcription	Duodenum Mucosa	Duodenum
20	chr14:69841800-69857800	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr14:69841800-69863000	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr14:69841800-69863800	Weak transcription	Stomach Mucosa	stomach
23	chr14:69842000-69851400	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr14:69842000-69852400	Weak transcription	Fetal Brain Male	brain
25	chr14:69842000-69858600	Weak transcription	Fetal Heart	heart
26	chr14:69842200-69857800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr14:69842400-69849000	Strong transcription	HepG2	liver
28	chr14:69842400-69854400	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr14:69842600-69863200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr14:69842800-69854800	Strong transcription	Primary T cells from cord blood	blood
31	chr14:69842800-69857800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:69842800-69862800	Strong transcription	Fetal Thymus	thymus
33	chr14:69843000-69854000	Strong transcription	Hela-S3	cervix
34	chr14:69843400-69856600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr14:69843400-69863000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr14:69843600-69851600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr14:69843600-69852400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr14:69843600-69862600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr14:69843600-69863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr14:69843800-69851000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr14:69843800-69851600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr14:69843800-69851600	Weak transcription	NHLF	lung
43	chr14:69843800-69851800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr14:69843800-69852400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr14:69843800-69852400	Weak transcription	Brain Angular Gyrus	brain
46	chr14:69843800-69852600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr14:69843800-69856400	Strong transcription	Dnd41	blood
48	chr14:69843800-69859800	Weak transcription	Right Ventricle	heart
49	chr14:69843800-69860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:69843800-69863000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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