Variant report

Variant	rs10142144
Chromosome Location	chr14:69842979-69842980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69841947..69843933-chr14:69852342..69854266,2	MCF-7	breast:
2	chr14:69841356..69843635-chr14:69843836..69846318,2	K562	blood:
3	chr13:42149633..42150133-chr14:69842933..69843862,2	MCF-7	breast:
4	chr14:69834457..69836260-chr14:69841920..69844753,2	K562	blood:
5	chr14:69833439..69838748-chr14:69841652..69843857,5	K562	blood:
6	chr14:69842726..69844478-chr14:69844525..69846772,2	MCF-7	breast:
7	chr14:69841672..69843783-chr14:69865247..69866834,2	MCF-7	breast:
8	chr14:69841304..69844140-chr14:69845246..69848193,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000029364	Chromatin interaction
ENSG00000100632	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10083335	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10129186	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10138313	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10140273	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10143593	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11622711	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11623094	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11624577	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12878175	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12884348	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12884802	0.90[ASN][1000 genomes]
rs12891351	0.84[AMR][1000 genomes]
rs12893282	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12895620	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1958121	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2085193	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2124191	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2124192	0.82[CEU][hapmap]
rs2296722	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2296724	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2296725	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2296727	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28401542	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28451089	0.85[AMR][1000 genomes]
rs28470369	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28661733	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34450502	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34731892	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34834622	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34840252	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3759770	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3759771	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4899294	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4899295	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902717	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56137363	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56953348	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58553067	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67502261	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71423356	0.90[ASN][1000 genomes]
rs7143858	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7145944	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7147362	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7147710	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7150586	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7159476	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8012954	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8014890	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8015317	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8015425	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8016781	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs959242	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10142144	SLC39A9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69821800-69852400	Weak transcription	Spleen	Spleen
2	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:69828000-69843000	Weak transcription	GM12878-XiMat	blood
4	chr14:69830000-69847200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:69830200-69843000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:69831200-69852400	Weak transcription	Brain Substantia Nigra	brain
7	chr14:69831400-69843200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:69831600-69843000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:69833200-69845600	Weak transcription	Fetal Stomach	stomach
10	chr14:69835400-69851800	Weak transcription	Psoas Muscle	Psoas
11	chr14:69835600-69851600	Weak transcription	Pancreas	Pancrea
12	chr14:69835800-69843400	Weak transcription	Brain Angular Gyrus	brain
13	chr14:69835800-69852400	Weak transcription	Small Intestine	intestine
14	chr14:69836800-69843200	Weak transcription	Right Ventricle	heart
15	chr14:69836800-69851600	Weak transcription	Gastric	stomach
16	chr14:69837000-69845800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr14:69837200-69843200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:69837200-69860000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr14:69837400-69851000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr14:69837600-69843200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr14:69838000-69846200	Weak transcription	Esophagus	oesophagus
22	chr14:69839000-69843000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:69839200-69852200	Weak transcription	Aorta	Aorta
24	chr14:69839800-69851600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr14:69840000-69845000	Weak transcription	K562	blood
26	chr14:69840200-69843200	Weak transcription	NHLF	lung
27	chr14:69840600-69843200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr14:69840800-69851600	Weak transcription	Colonic Mucosa	Colon
29	chr14:69840800-69852400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr14:69841000-69843400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:69841000-69843800	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr14:69841000-69844200	Strong transcription	Fetal Brain Female	brain
33	chr14:69841000-69845200	Strong transcription	Liver	Liver
34	chr14:69841000-69863400	Strong transcription	A549	lung
35	chr14:69841200-69843000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr14:69841200-69843000	Weak transcription	Hela-S3	cervix
37	chr14:69841200-69843000	Strong transcription	HMEC	breast
38	chr14:69841200-69843400	Strong transcription	Dnd41	blood
39	chr14:69841200-69843800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:69841200-69844400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr14:69841200-69844600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr14:69841200-69863000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr14:69841400-69843200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr14:69841400-69843400	Strong transcription	HSMM	muscle
45	chr14:69841400-69843600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:69841400-69843800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr14:69841400-69843800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr14:69841400-69844800	Strong transcription	Primary B cells from cord blood	blood
49	chr14:69841400-69847800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr14:69841400-69862800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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