Variant report

Variant	rs2296722
Chromosome Location	chr14:69908335-69908336
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69906509..69908579-chr14:69909822..69912590,2	K562	blood:
2	chr14:69905430..69909394-chr14:69909607..69912590,4	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10083335	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10129186	0.96[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10129720	0.82[YRI][hapmap];0.89[AMR][1000 genomes]
rs10138313	0.94[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10140273	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10142144	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10143593	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10143710	0.80[AMR][1000 genomes]
rs10151691	0.88[ASW][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs11622711	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11623094	0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11624577	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12147478	0.87[AMR][1000 genomes]
rs12147967	0.87[AMR][1000 genomes]
rs12878175	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12884348	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12884802	0.83[ASN][1000 genomes]
rs12893282	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12895620	0.94[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1466255	0.87[AMR][1000 genomes]
rs1958121	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1965878	0.87[AMR][1000 genomes]
rs2085193	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2100489	0.82[AMR][1000 genomes]
rs2124191	0.94[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2296724	0.88[ASW][hapmap];0.92[CEU][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2296725	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2296727	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28401542	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28451089	0.85[AMR][1000 genomes]
rs28470369	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28661733	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28879441	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34405286	0.87[AMR][1000 genomes]
rs34450502	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34731892	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34834622	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34840252	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3759770	0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs3759771	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4899294	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4899295	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4902717	0.94[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.98[LWK][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902719	0.81[AMR][1000 genomes]
rs56137363	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56392460	0.87[AMR][1000 genomes]
rs56953348	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58553067	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67502261	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71423356	0.83[ASN][1000 genomes]
rs7143858	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7145944	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7147362	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7147710	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7150586	0.91[TSI][hapmap]
rs7159476	0.90[AMR][1000 genomes]
rs7160248	0.87[AMR][1000 genomes]
rs8010767	0.87[AMR][1000 genomes]
rs8012954	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8014890	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8015317	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8015425	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8016781	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs959242	0.94[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3396933	chr14:69906914-70001258	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2296722	SLC39A9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69868000-69923200	Weak transcription	Esophagus	oesophagus
2	chr14:69887400-69913000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:69889200-69922400	Weak transcription	Brain Substantia Nigra	brain
4	chr14:69889200-69923400	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:69889400-69923200	Weak transcription	Pancreas	Pancrea
6	chr14:69890000-69922400	Weak transcription	Fetal Brain Male	brain
7	chr14:69890800-69922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:69891200-69922800	Weak transcription	Colonic Mucosa	Colon
9	chr14:69891200-69923000	Weak transcription	NHLF	lung
10	chr14:69892000-69920600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr14:69892200-69931400	Weak transcription	K562	blood
12	chr14:69893000-69908600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr14:69893000-69919800	Weak transcription	Spleen	Spleen
14	chr14:69893000-69922800	Weak transcription	Aorta	Aorta
15	chr14:69893200-69926800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:69893400-69910800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:69893400-69922200	Weak transcription	Left Ventricle	heart
18	chr14:69893400-69922400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr14:69893400-69922600	Weak transcription	Brain Germinal Matrix	brain
20	chr14:69893400-69922800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:69893400-69923000	Weak transcription	Lung	lung
22	chr14:69893600-69908400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:69893600-69908600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr14:69893600-69908800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr14:69893600-69908800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr14:69893600-69920200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr14:69893600-69920400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr14:69893600-69922000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:69893600-69922400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:69893600-69922400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr14:69893600-69922800	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:69893600-69923200	Weak transcription	Gastric	stomach
33	chr14:69893600-69925000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr14:69893800-69908600	Weak transcription	Hela-S3	cervix
35	chr14:69893800-69908800	Weak transcription	HSMM	muscle
36	chr14:69894000-69908600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr14:69894000-69916000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:69894000-69922200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr14:69894000-69922800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr14:69894000-69924400	Weak transcription	Brain Angular Gyrus	brain
41	chr14:69894400-69908800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr14:69894400-69908800	Weak transcription	Fetal Intestine Large	intestine
43	chr14:69894400-69919800	Weak transcription	Ovary	ovary
44	chr14:69894600-69908800	Weak transcription	Osteobl	bone
45	chr14:69894600-69909800	Weak transcription	HUVEC	blood vessel
46	chr14:69894600-69910800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr14:69894600-69919200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr14:69894600-69920600	Weak transcription	Adipose Nuclei	Adipose
49	chr14:69894600-69921800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr14:69894600-69922200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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