Variant report

Variant	rs8015425
Chromosome Location	chr14:69841362-69841363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69841356..69843635-chr14:69843836..69846318,2	K562	blood:
2	chr14:69821172..69826934-chr14:69835934..69842143,9	MCF-7	breast:
3	chr14:69837785..69841681-chr14:69853378..69856330,3	MCF-7	breast:
4	chr14:69841304..69844140-chr14:69845246..69848193,3	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10083335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10129186	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10129720	0.83[AMR][1000 genomes]
rs10138313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140273	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10143593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151691	0.81[AMR][1000 genomes]
rs11622711	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11623094	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs11624577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147478	0.81[AMR][1000 genomes]
rs12147967	0.81[AMR][1000 genomes]
rs12878175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884348	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12884802	0.91[ASN][1000 genomes]
rs12891351	0.80[AMR][1000 genomes]
rs12893282	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12895620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455053	0.81[JPT][hapmap]
rs1466255	0.81[AMR][1000 genomes]
rs1958121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965878	0.81[AMR][1000 genomes]
rs2085193	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124192	0.82[CEU][hapmap]
rs2296722	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2296724	1.00[CEU][hapmap];0.91[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2296725	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2296727	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28401542	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28451089	0.89[AMR][1000 genomes]
rs28470369	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661733	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34405286	0.81[AMR][1000 genomes]
rs34450502	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34731892	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34834622	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34840252	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759770	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs3759771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899294	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4899295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56137363	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56392460	0.81[AMR][1000 genomes]
rs56953348	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58553067	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67502261	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423356	0.91[ASN][1000 genomes]
rs7143858	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7147362	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7147710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7150586	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7159476	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7160248	0.81[AMR][1000 genomes]
rs8010767	0.81[AMR][1000 genomes]
rs8012954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8014890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8015317	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8016781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959242	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8015425	SLC39A9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69818600-69842800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:69821800-69852400	Weak transcription	Spleen	Spleen
3	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:69828000-69843000	Weak transcription	GM12878-XiMat	blood
5	chr14:69830000-69847200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:69830200-69842400	Weak transcription	NHDF-Ad	bronchial
7	chr14:69830200-69843000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:69830600-69841400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:69831200-69841600	Weak transcription	Brain Anterior Caudate	brain
10	chr14:69831200-69842200	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:69831200-69842800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:69831200-69852400	Weak transcription	Brain Substantia Nigra	brain
13	chr14:69831400-69843200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:69831600-69843000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:69831800-69841600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr14:69832000-69842400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:69832400-69842400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:69833200-69845600	Weak transcription	Fetal Stomach	stomach
19	chr14:69833400-69842200	Weak transcription	Fetal Intestine Large	intestine
20	chr14:69834000-69841400	Weak transcription	HSMM	muscle
21	chr14:69834000-69841800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr14:69834200-69842800	Weak transcription	Lung	lung
23	chr14:69835200-69841400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr14:69835200-69841600	Weak transcription	Fetal Muscle Leg	muscle
25	chr14:69835400-69841600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:69835400-69851800	Weak transcription	Psoas Muscle	Psoas
27	chr14:69835600-69841600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr14:69835600-69851600	Weak transcription	Pancreas	Pancrea
29	chr14:69835800-69843400	Weak transcription	Brain Angular Gyrus	brain
30	chr14:69835800-69852400	Weak transcription	Small Intestine	intestine
31	chr14:69836400-69841600	Weak transcription	Adipose Nuclei	Adipose
32	chr14:69836400-69842200	Weak transcription	Thymus	Thymus
33	chr14:69836800-69843200	Weak transcription	Right Ventricle	heart
34	chr14:69836800-69851600	Weak transcription	Gastric	stomach
35	chr14:69837000-69841400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr14:69837000-69841600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:69837000-69841600	Weak transcription	Left Ventricle	heart
38	chr14:69837000-69841800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr14:69837000-69842000	Weak transcription	Osteobl	bone
40	chr14:69837000-69845800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr14:69837200-69841400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr14:69837200-69841600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr14:69837200-69842200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr14:69837200-69842200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr14:69837200-69842200	Weak transcription	HSMMtube	muscle
46	chr14:69837200-69842400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr14:69837200-69842600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr14:69837200-69842800	Weak transcription	Fetal Thymus	thymus
49	chr14:69837200-69843200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr14:69837200-69860000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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