Variant report

Variant	rs10140273
Chromosome Location	chr14:69895289-69895290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10083335	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10129186	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10129720	0.80[AMR][1000 genomes]
rs10138313	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142144	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10143593	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143710	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11622711	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11623094	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11624577	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12878175	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884348	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12884802	0.91[ASN][1000 genomes]
rs12891351	0.85[AMR][1000 genomes]
rs12893282	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12895620	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958121	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085193	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100489	0.92[AMR][1000 genomes]
rs2124191	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124192	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2296722	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2296724	0.93[EUR][1000 genomes]
rs2296725	0.93[EUR][1000 genomes]
rs2296727	0.93[EUR][1000 genomes]
rs28401542	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28470369	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661733	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28879441	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34450502	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34731892	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34834622	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34840252	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759770	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3759771	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899294	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4899295	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902717	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902719	0.91[AMR][1000 genomes]
rs56137363	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56953348	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58553067	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67502261	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423356	0.91[ASN][1000 genomes]
rs7143858	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145944	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7147362	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7147710	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7150586	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7159476	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8012954	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8014890	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8015317	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8015425	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016781	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020817	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs959242	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9796392	0.84[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10140273	SLC39A9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69868000-69923200	Weak transcription	Esophagus	oesophagus
2	chr14:69871000-69902800	Weak transcription	Psoas Muscle	Psoas
3	chr14:69885600-69899400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:69886400-69908200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr14:69887400-69913000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:69888400-69895800	Weak transcription	Fetal Kidney	kidney
7	chr14:69889200-69922400	Weak transcription	Brain Substantia Nigra	brain
8	chr14:69889200-69923400	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:69889400-69923200	Weak transcription	Pancreas	Pancrea
10	chr14:69889600-69906400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:69889800-69895600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:69890000-69895600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:69890000-69922400	Weak transcription	Fetal Brain Male	brain
14	chr14:69890200-69895600	Strong transcription	Dnd41	blood
15	chr14:69890400-69895800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:69890600-69895400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr14:69890600-69896400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:69890600-69896600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:69890800-69895600	Strong transcription	Primary T cells from cord blood	blood
20	chr14:69890800-69896200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr14:69890800-69896400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:69890800-69897200	Strong transcription	Primary B cells from cord blood	blood
23	chr14:69890800-69897200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr14:69890800-69922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:69891200-69922800	Weak transcription	Colonic Mucosa	Colon
26	chr14:69891200-69923000	Weak transcription	NHLF	lung
27	chr14:69891400-69895400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr14:69891400-69895800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:69891400-69896800	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr14:69891800-69895600	Strong transcription	NH-A	brain
31	chr14:69891800-69895800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:69891800-69896200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr14:69892000-69896200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr14:69892000-69920600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr14:69892200-69896400	Strong transcription	Fetal Muscle Trunk	muscle
36	chr14:69892200-69931400	Weak transcription	K562	blood
37	chr14:69892400-69896200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:69892600-69896600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr14:69892800-69896800	Strong transcription	Primary hematopoietic stem cells	blood
40	chr14:69893000-69895800	Strong transcription	HSMMtube	muscle
41	chr14:69893000-69908600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr14:69893000-69919800	Weak transcription	Spleen	Spleen
43	chr14:69893000-69922800	Weak transcription	Aorta	Aorta
44	chr14:69893200-69926800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr14:69893400-69898400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr14:69893400-69910800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr14:69893400-69922200	Weak transcription	Left Ventricle	heart
48	chr14:69893400-69922400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr14:69893400-69922600	Weak transcription	Brain Germinal Matrix	brain
50	chr14:69893400-69922800	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links