Variant report

Variant	rs7150586
Chromosome Location	chr14:69844239-69844240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69841356..69843635-chr14:69843836..69846318,2	K562	blood:
2	chr14:69832322..69833940-chr14:69843790..69845476,2	MCF-7	breast:
3	chr14:69834457..69836260-chr14:69841920..69844753,2	K562	blood:
4	chr14:69843804..69846515-chr14:69848957..69850700,2	MCF-7	breast:
5	chr14:69824235..69826782-chr14:69843380..69845607,3	MCF-7	breast:
6	chr14:69842726..69844478-chr14:69844525..69846772,2	MCF-7	breast:
7	chr14:69843007..69844959-chr14:69863528..69866274,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100632	Chromatin interaction
ENSG00000029364	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10083335	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10129186	0.80[EUR][1000 genomes]
rs10129720	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10138313	0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs10140273	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10142144	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10143593	0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs10143710	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10151691	0.94[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];0.95[TSI][hapmap]
rs11623094	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11624577	0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs12436172	0.89[CHB][hapmap];0.95[YRI][hapmap]
rs12878175	0.91[TSI][hapmap]
rs12891351	0.99[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12895620	0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1958121	0.91[TSI][hapmap]
rs2100489	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2124191	0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs2124192	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2296722	0.91[TSI][hapmap]
rs2296724	0.87[TSI][hapmap]
rs28470369	0.80[EUR][1000 genomes]
rs28661733	0.80[EUR][1000 genomes]
rs28879441	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34450502	0.88[AMR][1000 genomes]
rs34840252	0.80[EUR][1000 genomes]
rs3759770	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3759771	0.80[AMR][1000 genomes]
rs4899295	0.89[TSI][hapmap]
rs4902717	0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs4902719	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67502261	0.80[EUR][1000 genomes]
rs7143858	0.80[EUR][1000 genomes]
rs7145944	0.91[TSI][hapmap]
rs7147710	0.91[TSI][hapmap]
rs8014890	0.91[TSI][hapmap]
rs8015317	0.80[EUR][1000 genomes]
rs8015425	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8016781	0.80[EUR][1000 genomes]
rs8020817	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs959242	0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9796392	0.83[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7150586	SLC39A9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69821800-69852400	Weak transcription	Spleen	Spleen
2	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:69830000-69847200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:69831200-69852400	Weak transcription	Brain Substantia Nigra	brain
5	chr14:69833200-69845600	Weak transcription	Fetal Stomach	stomach
6	chr14:69835400-69851800	Weak transcription	Psoas Muscle	Psoas
7	chr14:69835600-69851600	Weak transcription	Pancreas	Pancrea
8	chr14:69835800-69852400	Weak transcription	Small Intestine	intestine
9	chr14:69836800-69851600	Weak transcription	Gastric	stomach
10	chr14:69837000-69845800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:69837200-69860000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr14:69837400-69851000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:69838000-69846200	Weak transcription	Esophagus	oesophagus
14	chr14:69839200-69852200	Weak transcription	Aorta	Aorta
15	chr14:69839800-69851600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:69840000-69845000	Weak transcription	K562	blood
17	chr14:69840800-69851600	Weak transcription	Colonic Mucosa	Colon
18	chr14:69840800-69852400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:69841000-69845200	Strong transcription	Liver	Liver
20	chr14:69841000-69863400	Strong transcription	A549	lung
21	chr14:69841200-69844400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:69841200-69844600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:69841200-69863000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr14:69841400-69844800	Strong transcription	Primary B cells from cord blood	blood
25	chr14:69841400-69847800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr14:69841400-69862800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:69841600-69848600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:69841600-69858000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:69841600-69863400	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr14:69841800-69844400	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr14:69841800-69848400	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr14:69841800-69849800	Strong transcription	Duodenum Mucosa	Duodenum
33	chr14:69841800-69857800	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr14:69841800-69863000	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr14:69841800-69863800	Weak transcription	Stomach Mucosa	stomach
36	chr14:69842000-69851400	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr14:69842000-69852400	Weak transcription	Fetal Brain Male	brain
38	chr14:69842000-69858600	Weak transcription	Fetal Heart	heart
39	chr14:69842200-69844800	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr14:69842200-69846800	Strong transcription	NHEK	skin
41	chr14:69842200-69847800	Strong transcription	Thymus	Thymus
42	chr14:69842200-69857800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr14:69842400-69844400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr14:69842400-69846600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr14:69842400-69849000	Strong transcription	HepG2	liver
46	chr14:69842400-69854400	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr14:69842600-69844400	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr14:69842600-69845400	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr14:69842600-69848400	Strong transcription	Placenta	Placenta
50	chr14:69842600-69863200	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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