Variant report

Variant	rs7143858
Chromosome Location	chr14:69864486-69864487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:69864341-69865807	PFSK-1	brain:	n/a	n/a
2	POLR2A	chr14:69864449-69865904	GM12891	blood:	n/a	n/a
3	PML	chr14:69864325-69865879	GM12878	blood:	n/a	n/a
4	TAF1	chr14:69864445-69865738	H1-hESC	embryonic stem cell:	n/a	n/a
5	HEY1	chr14:69864461-69865689	K562	blood:	n/a	n/a
6	TAF1	chr14:69864461-69865736	A549	lung:	n/a	n/a
7	POLR2A	chr14:69863965-69866195	HepG2	liver:	n/a	n/a
8	POLR2A	chr14:69864023-69866000	K562	blood:	n/a	n/a
9	GABPA	chr14:69864069-69866291	MCF-7	breast:	n/a	n/a
10	POLR2A	chr14:69864111-69865971	Hela-S3	cervix:	n/a	n/a
11	TCF12	chr14:69864446-69865678	ECC-1	luminal epithelium:	n/a	n/a
12	MAX	chr14:69864474-69865853	A549	lung:	n/a	chr14:69864653-69864662
13	POLR2A	chr14:69863548-69866554	MCF10A-Er-Src	breast:	n/a	n/a
14	POLR2A	chr14:69863949-69865941	GM12892	blood:	n/a	n/a
15	POLR2A	chr14:69864113-69866189	Hela-S3	cervix:	n/a	n/a
16	MXI1	chr14:69863745-69866480	IMR90	lung:	n/a	n/a
17	POLR2A	chr14:69864331-69864496	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr14:69863965-69866140	IMR90	lung:	n/a	n/a
19	E2F6	chr14:69864192-69865577	K562	blood:	n/a	chr14:69864331-69864345 chr14:69864951-69864959 chr14:69864796-69864807 chr14:69864951-69864959 chr14:69864951-69864959 chr14:69864952-69864959
20	POLR2A	chr14:69863800-69866247	SK-N-MC	brain:	n/a	n/a
21	POLR2A	chr14:69864450-69865770	U87	brain:	n/a	n/a
22	POLR2A	chr14:69863699-69866185	H1-hESC	embryonic stem cell:	n/a	n/a
23	SIX5	chr14:69864415-69865832	A549	lung:	n/a	n/a
24	POLR2A	chr14:69863937-69865700	GM19099	blood:	n/a	n/a
25	SIN3AK20	chr14:69864449-69866247	MCF-7	breast:	n/a	n/a
26	POLR2A	chr14:69863778-69866182	GM12878	blood:	n/a	n/a
27	CREB1	chr14:69864469-69865590	A549	lung:	n/a	n/a
28	POLR2A	chr14:69863841-69866266	GM12891	blood:	n/a	n/a
29	NFIC	chr14:69864431-69865765	GM12878	blood:	n/a	n/a
30	MTA3	chr14:69863957-69866030	GM12878	blood:	n/a	n/a
31	POLR2A	chr14:69863957-69865829	GM12892	blood:	n/a	n/a
32	POLR2A	chr14:69864334-69865992	GM12878	blood:	n/a	n/a
33	POLR2A	chr14:69864431-69865200	GM12878	blood:	n/a	n/a
34	POLR2A	chr14:69864232-69865608	HUVEC	blood vessel:	n/a	n/a
35	POLR2A	chr14:69863872-69866014	GM19193	blood:	n/a	n/a
36	TBP	chr14:69864281-69865667	K562	blood:	n/a	n/a
37	SIN3A	chr14:69864040-69866267	H1-hESC	embryonic stem cell:	n/a	n/a
38	POLR2A	chr14:69863393-69865605	K562	blood:	n/a	n/a
39	POLR2A	chr14:69864014-69865890	Hela-S3	cervix:	n/a	n/a
40	FOXM1	chr14:69863947-69865628	GM12878	blood:	n/a	n/a
41	POLR2A	chr14:69864455-69865991	MCF-7	breast:	n/a	n/a
42	HA-E2F1	chr14:69864485-69865846	MCF-7	breast:	n/a	chr14:69864951-69864959 chr14:69864951-69864959 chr14:69864952-69864959
43	POLR2A	chr14:69864065-69865713	PANC-1	pancreas:	n/a	n/a
44	POLR2A	chr14:69864299-69865921	PBDE	blood:	n/a	n/a
45	POLR2A	chr14:69864477-69865650	HUVEC	blood vessel:	n/a	n/a
46	POLR2A	chr14:69863975-69866129	GM12892	blood:	n/a	n/a
47	CHD1	chr14:69863883-69865783	H1-hESC	embryonic stem cell:	n/a	chr14:69865033-69865042
48	SIN3AK20	chr14:69864448-69866262	MCF-7	breast:	n/a	n/a
49	YY1	chr14:69864453-69866183	SK-N-SH	brain:	n/a	chr14:69865141-69865163 chr14:69865307-69865317 chr14:69865307-69865317 chr14:69864885-69864896 chr14:69864980-69864994 chr14:69865139-69865158 chr14:69865295-69865317
50	POLR2A	chr14:69864388-69865940	NB4	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:69863611..69866530-chr14:81685832..81688549,2	K562	blood:
2	chr14:69618202..69621032-chr14:69863576..69866501,3	MCF-7	breast:
3	chr14:69864148..69866880-chr14:70234778..70237310,2	MCF-7	breast:

Variant related genes	Relation type
SLC39A9	TF binding region
ERH	TF binding region
ENSG00000100650	Chromatin interaction
ENSG00000139990	Chromatin interaction
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10083335	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10129186	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10129720	0.86[AMR][1000 genomes]
rs10138313	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10140273	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10142144	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10143593	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10143710	0.81[EUR][1000 genomes]
rs10151691	0.83[AMR][1000 genomes]
rs11622711	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11623094	0.82[EUR][1000 genomes]
rs11624577	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12147478	0.83[AMR][1000 genomes]
rs12147967	0.83[AMR][1000 genomes]
rs12878175	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12884348	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12884802	0.90[ASN][1000 genomes]
rs12893282	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12895620	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1466255	0.83[AMR][1000 genomes]
rs1958121	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1965878	0.83[AMR][1000 genomes]
rs2085193	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2124191	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2124192	0.81[EUR][1000 genomes]
rs2296722	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2296724	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2296725	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2296727	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28401542	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28451089	0.91[AMR][1000 genomes]
rs28470369	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28661733	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28879441	0.81[EUR][1000 genomes]
rs34405286	0.83[AMR][1000 genomes]
rs34450502	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34731892	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34834622	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34840252	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3759770	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3759771	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4899294	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4899295	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902717	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56137363	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56392460	0.83[AMR][1000 genomes]
rs56953348	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58553067	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67502261	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71423356	0.90[ASN][1000 genomes]
rs7145944	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7147362	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7147710	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7150586	0.80[EUR][1000 genomes]
rs7159476	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7160248	0.83[AMR][1000 genomes]
rs8010767	0.83[AMR][1000 genomes]
rs8012954	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8014890	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8015317	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8015425	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8016781	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8020817	0.81[EUR][1000 genomes]
rs959242	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7143858	SLC39A9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69863400-69866000	Active TSS	Psoas Muscle	Psoas
2	chr14:69863600-69864600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:69863600-69864600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:69863600-69865800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr14:69863600-69865800	Active TSS	Right Ventricle	heart
6	chr14:69863600-69866400	Active TSS	HMEC	breast
7	chr14:69863600-69867000	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr14:69863600-69867800	Active TSS	Right Atrium	heart
9	chr14:69863600-69868200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:69863600-69869200	Active TSS	K562	blood
11	chr14:69863800-69864600	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr14:69863800-69864600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
13	chr14:69863800-69864800	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr14:69863800-69866400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:69863800-69866400	Active TSS	HSMMtube	muscle
16	chr14:69863800-69866600	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr14:69863800-69866800	Active TSS	Stomach Mucosa	stomach
18	chr14:69863800-69867000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:69863800-69867200	Active TSS	H9 Cell Line	embryonic stem cell
20	chr14:69863800-69867600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr14:69863800-69867800	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr14:69863800-69869000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr14:69864000-69864600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr14:69864000-69864600	Flanking Active TSS	Primary B cells from peripheral blood	blood
25	chr14:69864000-69864600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
26	chr14:69864000-69864600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:69864000-69864800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr14:69864000-69866000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:69864000-69866000	Active TSS	Ovary	ovary
30	chr14:69864000-69866200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr14:69864000-69866200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr14:69864000-69866200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
33	chr14:69864000-69866200	Active TSS	Aorta	Aorta
34	chr14:69864000-69866200	Active TSS	Esophagus	oesophagus
35	chr14:69864000-69866400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:69864000-69866400	Active TSS	Hela-S3	cervix
37	chr14:69864000-69866600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr14:69864000-69866800	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr14:69864000-69867000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr14:69864000-69867000	Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr14:69864000-69867000	Active TSS	GM12878-XiMat	blood
42	chr14:69864000-69867800	Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr14:69864000-69868200	Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr14:69864200-69865400	Active TSS	Brain Germinal Matrix	brain
45	chr14:69864200-69865800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:69864200-69865800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr14:69864200-69865800	Active TSS	Primary hematopoietic stem cells short term culture	blood
48	chr14:69864200-69865800	Active TSS	Primary T helper cells PMA-I stimulated	--
49	chr14:69864200-69865800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr14:69864200-69865800	Active TSS	Brain Hippocampus Middle	brain

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