Variant report

Variant	rs3759771
Chromosome Location	chr14:69867489-69867490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr14:69867132-69867593	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69658868..69661377-chr14:69866532..69868525,2	MCF-7	breast:

Variant related genes	Relation type
ERH	TF binding region

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10083335	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10129186	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10129720	0.80[CEU][hapmap];0.85[AMR][1000 genomes]
rs10138313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140273	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142144	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10143593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151691	0.82[AMR][1000 genomes]
rs11622711	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11623094	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11624577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147478	0.82[AMR][1000 genomes]
rs12147967	0.82[AMR][1000 genomes]
rs12878175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884348	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12884802	0.91[ASN][1000 genomes]
rs12893282	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12895620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455053	0.81[JPT][hapmap]
rs1466255	0.82[AMR][1000 genomes]
rs1958121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1965878	0.82[AMR][1000 genomes]
rs2085193	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124192	0.83[CEU][hapmap]
rs2296722	0.96[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2296724	0.96[CEU][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2296725	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2296727	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28401542	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28451089	0.90[AMR][1000 genomes]
rs28470369	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661733	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34405286	0.82[AMR][1000 genomes]
rs34450502	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34731892	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34834622	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34840252	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759770	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4899294	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4899295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56137363	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56392460	0.82[AMR][1000 genomes]
rs56953348	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58553067	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67502261	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423356	0.91[ASN][1000 genomes]
rs7143858	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7147362	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7147710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7150586	0.80[AMR][1000 genomes]
rs7159476	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7160248	0.82[AMR][1000 genomes]
rs8010767	0.82[AMR][1000 genomes]
rs8012954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8014890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8015317	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8015425	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959242	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3759771	SLC39A9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69863600-69867800	Active TSS	Right Atrium	heart
2	chr14:69863600-69868200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:69863600-69869200	Active TSS	K562	blood
4	chr14:69863800-69867600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:69863800-69867800	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr14:69863800-69869000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:69864000-69867800	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr14:69864000-69868200	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr14:69864200-69867600	Active TSS	Colonic Mucosa	Colon
10	chr14:69864200-69868000	Active TSS	H1 Cell Line	embryonic stem cell
11	chr14:69864200-69868200	Active TSS	Pancreas	Pancrea
12	chr14:69864200-69868400	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr14:69865600-69867600	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr14:69865600-69868000	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr14:69865800-69867600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:69865800-69867600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr14:69865800-69867600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr14:69865800-69867600	Flanking Active TSS	Brain Angular Gyrus	brain
19	chr14:69865800-69867600	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr14:69865800-69867600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
21	chr14:69865800-69868000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:69865800-69868000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr14:69865800-69868000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr14:69865800-69868200	Flanking Active TSS	NH-A	brain
25	chr14:69865800-69868400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
26	chr14:69865800-69868800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:69865800-69868800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:69866000-69867800	Flanking Active TSS	Fetal Stomach	stomach
29	chr14:69866000-69868000	Enhancers	Spleen	Spleen
30	chr14:69866000-69868200	Flanking Active TSS	HUVEC	blood vessel
31	chr14:69866000-69868400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr14:69866000-69869400	Flanking Active TSS	Dnd41	blood
33	chr14:69866200-69868000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:69866200-69868000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr14:69866200-69868000	Enhancers	Small Intestine	intestine
36	chr14:69866200-69868200	Enhancers	Primary B cells from peripheral blood	blood
37	chr14:69866200-69868200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr14:69866200-69868600	Active TSS	HepG2	liver
39	chr14:69866200-69869400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr14:69866200-69888000	Weak transcription	Aorta	Aorta
41	chr14:69866400-69868000	Enhancers	Esophagus	oesophagus
42	chr14:69866400-69868000	Enhancers	Placenta Amnion	Placenta Amnion
43	chr14:69866400-69868200	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr14:69866400-69868200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:69866400-69868200	Flanking Active TSS	Brain Germinal Matrix	brain
46	chr14:69866400-69868400	Flanking Active TSS	Duodenum Mucosa	Duodenum
47	chr14:69866400-69868400	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr14:69866400-69868400	Flanking Active TSS	Osteobl	bone
49	chr14:69866400-69868800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:69866400-69869400	Enhancers	Primary monocytes fromperipheralblood	blood

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