Variant report

Variant	rs2124192
Chromosome Location	chr14:69869145-69869146
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69823607..69825370-chr14:69868914..69871181,2	MCF-7	breast:
2	chr14:69618593..69621450-chr14:69868461..69871153,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10129186	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs10129720	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10138313	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs10140273	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10142144	0.82[CEU][hapmap]
rs10143593	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs10143710	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151691	0.88[CEU][hapmap];0.94[CHB][hapmap]
rs11623094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624577	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs12436172	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs12878175	0.82[CEU][hapmap]
rs12891351	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12895620	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs1466255	0.81[ASN][1000 genomes]
rs1958121	0.82[CEU][hapmap]
rs1965878	0.81[ASN][1000 genomes]
rs2100489	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2124191	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs28401542	0.80[EUR][1000 genomes]
rs28470369	0.81[EUR][1000 genomes]
rs28661733	0.81[EUR][1000 genomes]
rs28879441	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34450502	0.86[AMR][1000 genomes]
rs34840252	0.81[EUR][1000 genomes]
rs3759770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759771	0.83[CEU][hapmap]
rs4899295	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs4902717	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs4902719	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56392460	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67502261	0.81[EUR][1000 genomes]
rs7143858	0.81[EUR][1000 genomes]
rs7145944	0.82[CEU][hapmap]
rs7147710	0.82[CEU][hapmap]
rs7150586	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7160248	0.81[ASN][1000 genomes]
rs8010767	0.80[EUR][1000 genomes]
rs8012954	0.82[CEU][hapmap]
rs8014890	0.82[CEU][hapmap]
rs8015317	0.81[EUR][1000 genomes]
rs8016781	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs8020817	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959242	0.81[EUR][1000 genomes]
rs9796392	0.83[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2124192	SLC39A9	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69863600-69869200	Active TSS	K562	blood
2	chr14:69866000-69869400	Flanking Active TSS	Dnd41	blood
3	chr14:69866200-69869400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:69866200-69888000	Weak transcription	Aorta	Aorta
5	chr14:69866400-69869400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr14:69866800-69869200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:69866800-69869600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr14:69866800-69875400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:69867000-69869200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:69867200-69869200	Enhancers	Liver	Liver
11	chr14:69867200-69869400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr14:69867200-69871200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:69867400-69870200	Active TSS	GM12878-XiMat	blood
14	chr14:69867600-69869400	Enhancers	Primary T cells from cord blood	blood
15	chr14:69867600-69869400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr14:69867800-69870600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr14:69868000-69869200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:69868000-69870600	Weak transcription	Fetal Intestine Small	intestine
19	chr14:69868000-69870600	Weak transcription	Left Ventricle	heart
20	chr14:69868000-69870800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr14:69868000-69872000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:69868000-69872600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr14:69868000-69872800	Weak transcription	Placenta	Placenta
24	chr14:69868000-69875000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:69868000-69875400	Weak transcription	Spleen	Spleen
26	chr14:69868000-69876200	Weak transcription	Small Intestine	intestine
27	chr14:69868000-69877000	Weak transcription	HSMMtube	muscle
28	chr14:69868000-69877800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr14:69868000-69890600	Weak transcription	Colonic Mucosa	Colon
30	chr14:69868000-69890800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr14:69868000-69890800	Weak transcription	Fetal Lung	lung
32	chr14:69868000-69891000	Weak transcription	Brain Anterior Caudate	brain
33	chr14:69868000-69892200	Weak transcription	Lung	lung
34	chr14:69868000-69923200	Weak transcription	Esophagus	oesophagus
35	chr14:69868200-69869400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:69868200-69869400	Enhancers	Brain Germinal Matrix	brain
37	chr14:69868200-69869600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr14:69868200-69870600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr14:69868200-69870600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr14:69868200-69870600	Weak transcription	Brain Substantia Nigra	brain
41	chr14:69868200-69870600	Weak transcription	Psoas Muscle	Psoas
42	chr14:69868200-69871000	Enhancers	Fetal Brain Male	brain
43	chr14:69868200-69872600	Weak transcription	Fetal Stomach	stomach
44	chr14:69868200-69873600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr14:69868200-69874800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr14:69868200-69874800	Weak transcription	Pancreas	Pancrea
47	chr14:69868200-69875400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr14:69868200-69881200	Weak transcription	Fetal Muscle Leg	muscle
49	chr14:69868200-69888400	Weak transcription	Fetal Intestine Large	intestine
50	chr14:69868200-69890000	Weak transcription	A549	lung

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