Variant report

Variant	rs12962729
Chromosome Location	chr18:25847899-25847900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10853682	1.00[JPT][hapmap]
rs11083249	1.00[JPT][hapmap]
rs11083250	1.00[JPT][hapmap]
rs11083252	1.00[JPT][hapmap]
rs11564299	1.00[JPT][hapmap]
rs11564310	1.00[JPT][hapmap]
rs11564336	1.00[JPT][hapmap]
rs11564341	1.00[JPT][hapmap]
rs11564355	0.95[GIH][hapmap];0.83[MEX][hapmap];0.80[AMR][1000 genomes]
rs11564381	1.00[JPT][hapmap]
rs11872284	1.00[JPT][hapmap]
rs11874384	1.00[JPT][hapmap]
rs11874478	1.00[JPT][hapmap]
rs12185349	1.00[JPT][hapmap]
rs12454164	1.00[JPT][hapmap]
rs12457737	1.00[JPT][hapmap]
rs12457781	1.00[JPT][hapmap]
rs12458418	1.00[JPT][hapmap]
rs12953509	1.00[JPT][hapmap]
rs12956036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12957520	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12959867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12960181	1.00[JPT][hapmap]
rs12969020	0.80[AMR][1000 genomes]
rs12969031	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443449	1.00[JPT][hapmap]
rs17446505	1.00[JPT][hapmap]
rs17446547	1.00[JPT][hapmap]
rs17446875	1.00[JPT][hapmap]
rs17447115	0.89[EUR][1000 genomes]
rs17447122	0.88[EUR][1000 genomes]
rs17447731	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17468924	1.00[JPT][hapmap]
rs17469001	1.00[JPT][hapmap]
rs17469371	1.00[JPT][hapmap]
rs17536472	1.00[JPT][hapmap]
rs1860642	1.00[JPT][hapmap]
rs1944288	1.00[JPT][hapmap]
rs2067772	1.00[JPT][hapmap]
rs2191636	1.00[JPT][hapmap]
rs35094764	0.91[EUR][1000 genomes]
rs35209992	0.91[EUR][1000 genomes]
rs4283304	0.91[EUR][1000 genomes]
rs4800289	1.00[JPT][hapmap]
rs4800842	1.00[JPT][hapmap]
rs6508526	1.00[JPT][hapmap]
rs719723	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs7234792	0.80[AMR][1000 genomes]
rs7239567	0.91[EUR][1000 genomes]
rs7241080	0.93[EUR][1000 genomes]
rs8089347	1.00[JPT][hapmap]
rs8091862	1.00[JPT][hapmap]
rs8095341	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25847200-25848000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr18:25847200-25848000	Enhancers	HSMM	muscle
3	chr18:25847200-25848200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr18:25847400-25848000	Enhancers	HSMMtube	muscle
5	chr18:25847400-25848200	Enhancers	NH-A	brain
6	chr18:25847800-25848200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr18:25847800-25848200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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