Variant report

Variant	rs13027502
Chromosome Location	chr2:116239649-116239650
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1006341	0.83[ASN][1000 genomes]
rs1037203	0.88[ASN][1000 genomes]
rs1037204	0.90[ASN][1000 genomes]
rs1037205	0.81[EUR][1000 genomes]
rs10496492	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10496496	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10496497	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11123306	0.83[EUR][1000 genomes]
rs11123307	0.83[EUR][1000 genomes]
rs12990043	0.83[EUR][1000 genomes]
rs13002945	0.90[ASN][1000 genomes]
rs13003256	0.90[ASN][1000 genomes]
rs13007729	0.90[ASN][1000 genomes]
rs1375153	0.88[ASN][1000 genomes]
rs1517367	0.92[ASN][1000 genomes]
rs1584400	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1584401	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1584403	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1597192	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1597193	0.83[EUR][1000 genomes]
rs17044588	0.90[ASN][1000 genomes]
rs17044593	0.90[ASN][1000 genomes]
rs1712000	0.83[EUR][1000 genomes]
rs1712002	0.83[EUR][1000 genomes]
rs1868327	0.90[ASN][1000 genomes]
rs2008495	0.83[ASN][1000 genomes]
rs2008948	0.92[ASN][1000 genomes]
rs2012617	0.83[ASN][1000 genomes]
rs2121998	0.83[EUR][1000 genomes]
rs2166906	0.89[ASN][1000 genomes]
rs2421104	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34140834	0.89[ASN][1000 genomes]
rs34884623	0.92[ASN][1000 genomes]
rs35444272	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35511048	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4241134	0.90[ASN][1000 genomes]
rs4241135	0.90[ASN][1000 genomes]
rs4313982	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4536655	0.90[ASN][1000 genomes]
rs4538209	0.90[ASN][1000 genomes]
rs4849399	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4849400	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4849406	0.82[ASN][1000 genomes]
rs4849407	0.82[ASN][1000 genomes]
rs4849408	0.83[ASN][1000 genomes]
rs55697033	0.87[ASN][1000 genomes]
rs55913162	0.82[ASN][1000 genomes]
rs67025581	0.87[ASN][1000 genomes]
rs67307325	0.83[ASN][1000 genomes]
rs6732466	0.83[EUR][1000 genomes]
rs67984587	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs708647	0.81[CEU][hapmap]
rs7421696	0.90[ASN][1000 genomes]
rs950586	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs965536	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv963897	chr2:116230681-116241292	Enhancers ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116236600-116241000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:116237600-116249200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:116239200-116246800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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