Variant report

Variant	rs1597192
Chromosome Location	chr2:116232505-116232506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1037203	0.84[ASN][1000 genomes]
rs1037204	0.86[ASN][1000 genomes]
rs1037205	0.81[EUR][1000 genomes]
rs10496492	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496496	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10496497	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11123306	0.83[EUR][1000 genomes]
rs11123307	0.83[EUR][1000 genomes]
rs12990043	0.83[EUR][1000 genomes]
rs13002945	0.86[ASN][1000 genomes]
rs13003256	0.86[ASN][1000 genomes]
rs13007729	0.86[ASN][1000 genomes]
rs13027502	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1375153	0.84[ASN][1000 genomes]
rs1517367	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1584400	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1584401	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1584403	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1597193	0.83[EUR][1000 genomes]
rs17044588	0.86[ASN][1000 genomes]
rs17044593	0.86[ASN][1000 genomes]
rs1712000	0.83[EUR][1000 genomes]
rs1712002	0.83[EUR][1000 genomes]
rs1868327	0.86[ASN][1000 genomes]
rs2008948	0.88[ASN][1000 genomes]
rs2012617	0.82[ASN][1000 genomes]
rs2121998	0.83[EUR][1000 genomes]
rs2166906	0.85[ASN][1000 genomes]
rs2421104	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34140834	0.85[ASN][1000 genomes]
rs34884623	0.94[ASN][1000 genomes]
rs35444272	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35511048	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4241134	0.86[ASN][1000 genomes]
rs4241135	0.86[ASN][1000 genomes]
rs4313982	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4536655	0.86[ASN][1000 genomes]
rs4538209	0.86[ASN][1000 genomes]
rs4849399	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4849400	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55697033	0.83[ASN][1000 genomes]
rs67025581	0.83[ASN][1000 genomes]
rs6732466	0.83[EUR][1000 genomes]
rs67984587	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7421696	0.86[ASN][1000 genomes]
rs950586	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs965536	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv963897	chr2:116230681-116241292	Enhancers ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116231400-116236600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:116232200-116233200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
3	chr2:116232200-116233400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:116232200-116233400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
5	chr2:116232200-116234400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr2:116232400-116233200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
7	chr2:116232400-116233200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:116232400-116233400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr2:116232400-116233400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:116232400-116233400	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr2:116232400-116233600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
12	chr2:116232400-116234400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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