Variant report

Variant	rs34884623
Chromosome Location	chr2:116235637-116235638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1006341	0.85[ASN][1000 genomes]
rs1037203	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1037204	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10496492	0.94[ASN][1000 genomes]
rs10496496	0.87[ASN][1000 genomes]
rs10496497	0.88[ASN][1000 genomes]
rs13002945	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13003256	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13007729	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13027502	0.92[ASN][1000 genomes]
rs1375153	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1517367	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1584400	0.88[ASN][1000 genomes]
rs1584401	0.88[ASN][1000 genomes]
rs1584403	0.88[ASN][1000 genomes]
rs1597192	0.94[ASN][1000 genomes]
rs17044588	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17044593	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17044687	0.81[ASN][1000 genomes]
rs1868327	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2008495	0.85[ASN][1000 genomes]
rs2008948	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2012617	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2166906	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2421104	0.89[ASN][1000 genomes]
rs34140834	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35393844	0.80[ASN][1000 genomes]
rs35444272	0.81[ASN][1000 genomes]
rs35511048	0.88[ASN][1000 genomes]
rs4241134	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4241135	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4313982	0.89[ASN][1000 genomes]
rs4536655	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4538209	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4849399	0.88[ASN][1000 genomes]
rs4849400	0.88[ASN][1000 genomes]
rs4849406	0.84[ASN][1000 genomes]
rs4849407	0.84[ASN][1000 genomes]
rs4849408	0.85[ASN][1000 genomes]
rs55697033	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55913162	0.84[ASN][1000 genomes]
rs67025581	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs67307325	0.85[ASN][1000 genomes]
rs67984587	0.88[ASN][1000 genomes]
rs7421696	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7578012	0.81[ASN][1000 genomes]
rs950586	0.81[ASN][1000 genomes]
rs965536	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv963897	chr2:116230681-116241292	Enhancers ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116231400-116236600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:116233400-116235800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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