Variant report

Variant	rs35511048
Chromosome Location	chr2:116249155-116249156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1006341	0.86[ASN][1000 genomes]
rs1037203	0.91[ASN][1000 genomes]
rs1037204	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10496492	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10496494	0.83[EUR][1000 genomes]
rs10496496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10496497	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11690107	0.82[EUR][1000 genomes]
rs13002613	0.81[EUR][1000 genomes]
rs13002945	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13003256	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13007729	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13009581	0.81[EUR][1000 genomes]
rs13027502	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1375144	0.83[EUR][1000 genomes]
rs1375153	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1448456	0.81[EUR][1000 genomes]
rs1517367	0.87[ASN][1000 genomes]
rs1530689	0.83[EUR][1000 genomes]
rs1584400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584401	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584403	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597189	0.83[EUR][1000 genomes]
rs1597192	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17044588	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17044593	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17044687	0.81[ASN][1000 genomes]
rs1868327	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2008495	0.86[ASN][1000 genomes]
rs2008948	0.92[ASN][1000 genomes]
rs2166906	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2421104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34140834	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs34884623	0.88[ASN][1000 genomes]
rs35444272	0.82[ASN][1000 genomes]
rs4241134	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4241135	0.93[ASN][1000 genomes]
rs4313982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4383330	0.83[EUR][1000 genomes]
rs4536655	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4538209	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4849398	0.83[EUR][1000 genomes]
rs4849399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4849400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4849406	0.85[ASN][1000 genomes]
rs4849407	0.85[ASN][1000 genomes]
rs4849408	0.86[ASN][1000 genomes]
rs55697033	0.89[ASN][1000 genomes]
rs55913162	0.85[ASN][1000 genomes]
rs67025581	0.90[ASN][1000 genomes]
rs67307325	0.86[ASN][1000 genomes]
rs67984587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7421696	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs950586	0.82[ASN][1000 genomes]
rs965536	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116237600-116249200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:116248400-116249600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:116248800-116249600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:116249000-116249200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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