Variant report

Variant	rs1584401
Chromosome Location	chr2:116247225-116247226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1006341	0.86[ASN][1000 genomes]
rs1037203	0.91[ASN][1000 genomes]
rs1037204	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10496492	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10496494	0.83[EUR][1000 genomes]
rs10496496	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10496497	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11690107	0.82[EUR][1000 genomes]
rs13002613	0.81[EUR][1000 genomes]
rs13002945	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13003256	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13007729	0.93[ASN][1000 genomes]
rs13009581	0.80[EUR][1000 genomes]
rs13027502	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1375144	0.83[EUR][1000 genomes]
rs1375153	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1448456	0.80[EUR][1000 genomes]
rs1517367	0.87[ASN][1000 genomes]
rs1530689	0.82[EUR][1000 genomes]
rs1584400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584403	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597189	0.83[EUR][1000 genomes]
rs1597192	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17044588	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17044593	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17044687	0.81[ASN][1000 genomes]
rs1868327	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2008495	0.86[ASN][1000 genomes]
rs2008948	0.92[ASN][1000 genomes]
rs2166906	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2421104	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34140834	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs34884623	0.88[ASN][1000 genomes]
rs35444272	0.82[ASN][1000 genomes]
rs35511048	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241134	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4241135	0.93[ASN][1000 genomes]
rs4313982	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4383330	0.82[EUR][1000 genomes]
rs4536655	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4538209	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4849398	0.83[EUR][1000 genomes]
rs4849399	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4849400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4849406	0.85[ASN][1000 genomes]
rs4849407	0.85[ASN][1000 genomes]
rs4849408	0.86[ASN][1000 genomes]
rs55697033	0.89[ASN][1000 genomes]
rs55913162	0.85[ASN][1000 genomes]
rs67025581	0.90[ASN][1000 genomes]
rs67307325	0.86[ASN][1000 genomes]
rs67984587	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs708647	0.81[CEU][hapmap]
rs7421696	0.93[ASN][1000 genomes]
rs950586	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs965536	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014859	chr2:116196951-116938584	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116237600-116249200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:116246600-116247600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:116246600-116247600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:116246600-116247800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:116246600-116249000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:116246800-116247600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:116246800-116247600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr2:116247200-116248400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links