Variant report

Variant	rs13034260
Chromosome Location	chr2:64093937-64093938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:64067489..64069560-chr2:64092679..64094973,2	K562	blood:
2	chr2:64067481..64069401-chr2:64090841..64094477,4	K562	blood:
3	chr2:64087116..64089164-chr2:64092966..64094614,2	K562	blood:
4	chr2:64072168..64074288-chr2:64092177..64094674,2	K562	blood:
5	chr2:64089750..64092603-chr2:64092679..64094462,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10166971	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12463827	0.82[EUR][1000 genomes]
rs12466966	0.93[EUR][1000 genomes]
rs12468093	0.84[EUR][1000 genomes]
rs12474366	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12475294	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12988017	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12990604	0.94[EUR][1000 genomes]
rs12993544	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12997303	0.85[EUR][1000 genomes]
rs12999675	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13005218	0.85[EUR][1000 genomes]
rs13007342	0.85[EUR][1000 genomes]
rs13007731	0.85[EUR][1000 genomes]
rs13009774	0.92[EUR][1000 genomes]
rs13010817	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13014781	0.90[EUR][1000 genomes]
rs13023542	0.89[EUR][1000 genomes]
rs13025640	0.90[EUR][1000 genomes]
rs13028805	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345479	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1437455	0.86[EUR][1000 genomes]
rs1545196	0.85[EUR][1000 genomes]
rs17555655	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17562312	0.91[EUR][1000 genomes]
rs17620012	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17701685	0.87[EUR][1000 genomes]
rs17701709	0.87[EUR][1000 genomes]
rs17752683	0.86[EUR][1000 genomes]
rs2287361	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2422110	0.82[EUR][1000 genomes]
rs34043307	0.88[EUR][1000 genomes]
rs34145077	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34196086	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34200806	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34239752	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34512058	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34900788	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35058898	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35122209	0.85[EUR][1000 genomes]
rs35247801	0.85[EUR][1000 genomes]
rs35253921	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35521527	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35552326	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35648996	0.89[EUR][1000 genomes]
rs35810427	0.91[EUR][1000 genomes]
rs35972278	0.92[EUR][1000 genomes]
rs35975566	0.94[EUR][1000 genomes]
rs36099158	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815616	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3934536	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075010	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4482470	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4544421	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4599090	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671072	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671534	1.00[ASN][1000 genomes]
rs4671535	1.00[ASN][1000 genomes]
rs4671537	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4671538	0.86[EUR][1000 genomes]
rs66476638	0.93[EUR][1000 genomes]
rs66535980	0.87[EUR][1000 genomes]
rs66595136	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66650505	0.93[EUR][1000 genomes]
rs66660401	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66993685	0.86[EUR][1000 genomes]
rs6730664	0.82[EUR][1000 genomes]
rs67366434	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67962955	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71422402	0.82[EUR][1000 genomes]
rs72808216	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72808218	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72808231	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808248	0.94[EUR][1000 genomes]
rs72808254	0.93[EUR][1000 genomes]
rs72808262	0.94[EUR][1000 genomes]
rs72808287	0.85[EUR][1000 genomes]
rs874695	0.85[EUR][1000 genomes]
rs893779	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64070200-64103000	Weak transcription	Gastric	stomach
2	chr2:64077000-64100200	Weak transcription	Ovary	ovary
3	chr2:64078000-64108000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:64081800-64100600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:64082200-64100200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:64082200-64110000	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:64083000-64123000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:64083000-64129200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr2:64083200-64097800	Weak transcription	Right Atrium	heart
10	chr2:64083200-64110200	Weak transcription	Small Intestine	intestine
11	chr2:64083200-64110600	Weak transcription	Pancreas	Pancrea
12	chr2:64083600-64095400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr2:64084000-64095600	Genic enhancers	Dnd41	blood
14	chr2:64084200-64094000	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:64084600-64100000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr2:64085400-64095000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:64085400-64095400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:64085400-64096600	Weak transcription	Brain Angular Gyrus	brain
19	chr2:64085400-64096600	Weak transcription	Brain Substantia Nigra	brain
20	chr2:64085400-64098000	Weak transcription	Lung	lung
21	chr2:64085400-64098000	Weak transcription	Psoas Muscle	Psoas
22	chr2:64085400-64098400	Weak transcription	Aorta	Aorta
23	chr2:64085400-64100000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr2:64085400-64100600	Weak transcription	Spleen	Spleen
25	chr2:64085600-64102400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr2:64086600-64096600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr2:64086600-64110000	Weak transcription	Esophagus	oesophagus
28	chr2:64086800-64096600	Weak transcription	Brain Anterior Caudate	brain
29	chr2:64086800-64100400	Weak transcription	Fetal Brain Female	brain
30	chr2:64086800-64100800	Weak transcription	Fetal Kidney	kidney
31	chr2:64086800-64102800	Weak transcription	Right Ventricle	heart
32	chr2:64087200-64099800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr2:64087600-64101800	Genic enhancers	Liver	Liver
34	chr2:64088000-64094000	Genic enhancers	NHEK	skin
35	chr2:64088000-64100000	Weak transcription	K562	blood
36	chr2:64088000-64107800	Weak transcription	Colonic Mucosa	Colon
37	chr2:64088400-64094800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr2:64088800-64095400	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr2:64088800-64100600	Weak transcription	Fetal Stomach	stomach
40	chr2:64089000-64094000	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr2:64089000-64094000	Strong transcription	Primary T cells from cord blood	blood
42	chr2:64089000-64094200	Genic enhancers	HUES64 Cell Line	embryonic stem cell
43	chr2:64089000-64099800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr2:64089400-64095200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
45	chr2:64089600-64094600	Genic enhancers	HUES6 Cell Line	embryonic stem cell
46	chr2:64089800-64101400	Weak transcription	Fetal Brain Male	brain
47	chr2:64090000-64096400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr2:64090000-64096600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr2:64090000-64102000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr2:64090200-64098600	Weak transcription	Hela-S3	cervix

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