Variant report

Variant	rs35552326
Chromosome Location	chr2:64084098-64084099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:64066677..64069203-chr2:64081708..64084913,3	MCF-7	breast:
2	chr2:64066782..64070718-chr2:64080924..64091365,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10166971	0.93[ASN][1000 genomes]
rs12466966	0.87[EUR][1000 genomes]
rs12474366	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12475294	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12988017	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12990604	0.87[EUR][1000 genomes]
rs12993544	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12999675	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13009774	0.85[EUR][1000 genomes]
rs13010817	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13014781	0.83[EUR][1000 genomes]
rs13023542	0.82[EUR][1000 genomes]
rs13025640	0.83[EUR][1000 genomes]
rs13028805	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13034260	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345479	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17555655	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17562312	0.85[EUR][1000 genomes]
rs17620012	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17701685	0.80[EUR][1000 genomes]
rs17701709	0.80[EUR][1000 genomes]
rs2287361	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34043307	0.82[EUR][1000 genomes]
rs34145077	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34196086	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34200806	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34239752	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34512058	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34900788	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35058898	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35253921	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35521527	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35648996	0.82[EUR][1000 genomes]
rs35810427	0.85[EUR][1000 genomes]
rs35972278	0.86[EUR][1000 genomes]
rs35975566	0.87[EUR][1000 genomes]
rs36099158	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815616	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3934536	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075010	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4482470	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4544421	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4599090	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671072	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671534	1.00[ASN][1000 genomes]
rs4671535	1.00[ASN][1000 genomes]
rs4671537	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66476638	0.87[EUR][1000 genomes]
rs66535980	0.80[EUR][1000 genomes]
rs66595136	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66650505	0.87[EUR][1000 genomes]
rs66660401	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67366434	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67962955	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72808216	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72808218	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72808231	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72808248	0.87[EUR][1000 genomes]
rs72808254	0.87[EUR][1000 genomes]
rs72808262	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64070200-64084600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:64070200-64103000	Weak transcription	Gastric	stomach
3	chr2:64072000-64084200	Weak transcription	Esophagus	oesophagus
4	chr2:64072600-64084600	Weak transcription	Hela-S3	cervix
5	chr2:64077000-64085000	Weak transcription	Brain Germinal Matrix	brain
6	chr2:64077000-64089000	Weak transcription	Fetal Brain Male	brain
7	chr2:64077000-64100200	Weak transcription	Ovary	ovary
8	chr2:64077200-64084200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:64077200-64084800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr2:64077200-64085000	Weak transcription	HMEC	breast
11	chr2:64077400-64084400	Weak transcription	Fetal Brain Female	brain
12	chr2:64078000-64085000	Weak transcription	Fetal Kidney	kidney
13	chr2:64078000-64108000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr2:64079400-64084800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr2:64079400-64084800	Weak transcription	HSMMtube	muscle
16	chr2:64079600-64084400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr2:64079800-64084400	Weak transcription	HSMM	muscle
18	chr2:64081400-64084200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:64081400-64084200	Weak transcription	Spleen	Spleen
20	chr2:64081400-64084600	Weak transcription	NHLF	lung
21	chr2:64081800-64089800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr2:64081800-64100600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr2:64082200-64084200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr2:64082200-64085000	Weak transcription	Brain Anterior Caudate	brain
25	chr2:64082200-64085400	Genic enhancers	Liver	Liver
26	chr2:64082200-64089600	Weak transcription	Stomach Mucosa	stomach
27	chr2:64082200-64091400	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr2:64082200-64092400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr2:64082200-64100200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr2:64082200-64110000	Weak transcription	Colon Smooth Muscle	Colon
31	chr2:64082400-64084400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr2:64082600-64085000	Strong transcription	Fetal Intestine Small	intestine
33	chr2:64082600-64085400	Strong transcription	HUVEC	blood vessel
34	chr2:64082600-64086800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr2:64082600-64087600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr2:64082600-64088800	Strong transcription	HepG2	liver
37	chr2:64082600-64089400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr2:64082800-64084400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr2:64082800-64084800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
40	chr2:64082800-64085000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr2:64082800-64085000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr2:64082800-64085200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:64082800-64085400	Genic enhancers	Fetal Thymus	thymus
44	chr2:64082800-64086400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr2:64082800-64087400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr2:64083000-64084200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr2:64083000-64084600	Weak transcription	Brain Hippocampus Middle	brain
48	chr2:64083000-64085400	Strong transcription	Primary B cells from cord blood	blood
49	chr2:64083000-64085600	Strong transcription	Duodenum Mucosa	Duodenum
50	chr2:64083000-64087000	Strong transcription	A549	lung

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