Variant report

Variant	rs67962955
Chromosome Location	chr2:64154875-64154876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10166971	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12463827	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12466966	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12468093	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12474366	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12475294	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12988017	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12990604	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12993544	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12996147	0.82[ASN][1000 genomes]
rs12997303	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12999675	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13005218	0.87[EUR][1000 genomes]
rs13007342	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13007731	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13009774	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13010817	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13014781	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13015703	0.82[ASN][1000 genomes]
rs13023542	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13025640	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13028805	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13034260	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1345479	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1437455	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1545196	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17555655	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17562312	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17620012	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17701685	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17701709	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17752683	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2002443	0.82[ASN][1000 genomes]
rs2287361	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2422110	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34043307	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34145077	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34196086	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34200806	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34239752	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34512058	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34683043	0.84[ASN][1000 genomes]
rs34900788	0.88[ASN][1000 genomes]
rs35058898	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35122209	0.87[EUR][1000 genomes]
rs35247801	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35253921	0.88[ASN][1000 genomes]
rs35521527	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35552326	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35648996	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35693031	0.84[ASN][1000 genomes]
rs35810427	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35972278	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35975566	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36099158	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3815616	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3934536	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4075010	0.85[EUR][1000 genomes]
rs4482470	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4544421	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4599090	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4671072	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4671534	0.88[ASN][1000 genomes]
rs4671535	0.88[ASN][1000 genomes]
rs4671537	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671538	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4671541	0.81[EUR][1000 genomes]
rs66476638	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66535980	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66595136	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66650505	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66660401	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66993685	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67366434	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71422402	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72808216	0.86[EUR][1000 genomes]
rs72808218	0.83[EUR][1000 genomes]
rs72808231	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72808236	0.86[ASN][1000 genomes]
rs72808248	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72808254	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72808262	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72808287	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs874695	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs893779	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv521717	chr2:64104132-64186582	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv874236	chr2:64154215-64179235	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64114000-64212000	Weak transcription	Small Intestine	intestine
2	chr2:64114200-64174800	Weak transcription	Right Ventricle	heart
3	chr2:64129600-64164000	Weak transcription	NHLF	lung
4	chr2:64129600-64201000	Weak transcription	Hela-S3	cervix
5	chr2:64130400-64155000	Strong transcription	HepG2	liver
6	chr2:64130400-64167600	Weak transcription	Fetal Heart	heart
7	chr2:64130400-64168400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr2:64130400-64211200	Weak transcription	Fetal Brain Male	brain
9	chr2:64130600-64168000	Weak transcription	Colon Smooth Muscle	Colon
10	chr2:64130800-64174800	Weak transcription	Stomach Mucosa	stomach
11	chr2:64131400-64155000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr2:64137400-64204800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr2:64138600-64168600	Weak transcription	Brain Angular Gyrus	brain
14	chr2:64139000-64168200	Weak transcription	Psoas Muscle	Psoas
15	chr2:64139000-64172800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:64139800-64161600	Weak transcription	HSMMtube	muscle
17	chr2:64139800-64167400	Weak transcription	NHEK	skin
18	chr2:64139800-64220600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr2:64140400-64187600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:64140400-64188800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr2:64140600-64172400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr2:64141200-64187600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr2:64141400-64167800	Weak transcription	Brain Anterior Caudate	brain
24	chr2:64141400-64189200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr2:64141600-64160400	Weak transcription	HUVEC	blood vessel
26	chr2:64141600-64164400	Weak transcription	Osteobl	bone
27	chr2:64141800-64160800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr2:64142600-64167600	Weak transcription	K562	blood
29	chr2:64142800-64189200	Weak transcription	Brain Substantia Nigra	brain
30	chr2:64143400-64167800	Weak transcription	GM12878-XiMat	blood
31	chr2:64147600-64159000	Weak transcription	Fetal Kidney	kidney
32	chr2:64147600-64159200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr2:64147600-64159800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr2:64147600-64178000	Weak transcription	A549	lung
35	chr2:64147800-64160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr2:64147800-64160400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr2:64147800-64160400	Weak transcription	NH-A	brain
38	chr2:64148000-64160800	Weak transcription	NHDF-Ad	bronchial
39	chr2:64148000-64164600	Weak transcription	HSMM	muscle
40	chr2:64149800-64167600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr2:64150600-64156600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr2:64151000-64155000	Strong transcription	Duodenum Mucosa	Duodenum
43	chr2:64152400-64155000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:64152400-64155000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr2:64152400-64155000	Strong transcription	Adipose Nuclei	Adipose
46	chr2:64152400-64155000	Strong transcription	Fetal Thymus	thymus
47	chr2:64152400-64155400	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr2:64152600-64155000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:64152600-64155600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr2:64153000-64155000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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