Variant report

Variant	rs34196086
Chromosome Location	chr2:64110266-64110267
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:64108363..64110268-chr2:64112506..64114878,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10166971	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12463827	0.82[ASN][1000 genomes]
rs12466966	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12474366	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12475294	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12988017	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12990604	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12993544	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12996147	0.82[EUR][1000 genomes]
rs12999675	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13009774	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13010817	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13014781	0.82[ASN][1000 genomes]
rs13025640	0.82[ASN][1000 genomes]
rs13028805	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13034260	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1345479	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17555655	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17562312	0.80[ASN][1000 genomes]
rs17620012	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2002443	0.82[EUR][1000 genomes]
rs2287361	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34043307	0.82[ASN][1000 genomes]
rs34145077	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34200806	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34239752	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34512058	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34683043	0.83[EUR][1000 genomes]
rs34700615	0.83[EUR][1000 genomes]
rs34900788	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35058898	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35253921	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35521527	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35552326	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35648996	0.82[ASN][1000 genomes]
rs35693031	0.84[EUR][1000 genomes]
rs35810427	0.86[ASN][1000 genomes]
rs35972278	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35975566	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36099158	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3815616	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3934536	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4482470	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4544421	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4599090	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4671072	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4671534	0.93[ASN][1000 genomes]
rs4671535	0.93[ASN][1000 genomes]
rs4671537	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4671540	0.82[EUR][1000 genomes]
rs66476638	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66595136	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66650505	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66660401	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6730664	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67366434	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67962955	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72808231	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72808236	0.86[ASN][1000 genomes]
rs72808248	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72808254	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72808262	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs893779	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv521717	chr2:64104132-64186582	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64083000-64123000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:64083000-64129200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr2:64083200-64110600	Weak transcription	Pancreas	Pancrea
4	chr2:64094000-64110800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr2:64101200-64113600	Weak transcription	Fetal Stomach	stomach
6	chr2:64101400-64110600	Weak transcription	HUVEC	blood vessel
7	chr2:64101800-64110400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:64101800-64110400	Weak transcription	Aorta	Aorta
9	chr2:64101800-64112800	Weak transcription	Fetal Kidney	kidney
10	chr2:64102000-64110400	Weak transcription	Fetal Intestine Small	intestine
11	chr2:64102200-64113000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:64102800-64110600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr2:64103200-64117400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr2:64103400-64110400	Weak transcription	Spleen	Spleen
15	chr2:64103600-64118600	Weak transcription	Brain Angular Gyrus	brain
16	chr2:64103600-64128400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:64103800-64130400	Weak transcription	Stomach Mucosa	stomach
18	chr2:64104000-64112200	Weak transcription	Fetal Brain Female	brain
19	chr2:64104000-64113400	Weak transcription	Brain Substantia Nigra	brain
20	chr2:64104000-64113600	Weak transcription	Fetal Brain Male	brain
21	chr2:64105200-64121600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr2:64105600-64118400	Strong transcription	HepG2	liver
23	chr2:64106600-64110400	Genic enhancers	Dnd41	blood
24	chr2:64107200-64130000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr2:64107400-64110400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:64107400-64116400	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr2:64107400-64119000	Strong transcription	HSMMtube	muscle
28	chr2:64107400-64119200	Strong transcription	Primary B cells from cord blood	blood
29	chr2:64107400-64121400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr2:64107400-64121800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:64107400-64127600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr2:64107400-64129600	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr2:64107600-64111400	Strong transcription	NH-A	brain
34	chr2:64107600-64111600	Strong transcription	Duodenum Mucosa	Duodenum
35	chr2:64107600-64122000	Strong transcription	HSMM	muscle
36	chr2:64107600-64122200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:64107600-64122200	Strong transcription	Primary B cells from peripheral blood	blood
38	chr2:64107600-64122200	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr2:64107600-64128800	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr2:64107600-64129200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr2:64107800-64112600	Strong transcription	Colonic Mucosa	Colon
42	chr2:64107800-64115800	Strong transcription	Fetal Muscle Leg	muscle
43	chr2:64107800-64117600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:64107800-64118800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr2:64107800-64124600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr2:64107800-64126200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr2:64107800-64127000	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr2:64108000-64113400	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr2:64108000-64118600	Strong transcription	A549	lung
50	chr2:64108200-64112200	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links